Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y72 entry

There are 7 chains in PDB entry 8Y72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	PHE 354
B	ASP 5	ASN 340
C	ILE 9	LYS 64
E	VAL 2	LEU 248
R	SER 66	PHE 352
D	TYR 1	TYR 1
D	GLY 3	GLY 3

There are 29 helices in PDB entry 8Y72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	42	44	Right-handed 310
Helix 3	AA3	A	45	55	Right-handed alpha
Helix 4	AA4	A	207	216	Right-handed 310
Helix 5	AA5	A	228	230	Right-handed 310
Helix 6	AA6	A	241	255	Right-handed alpha
Helix 7	AA7	A	270	281	Right-handed alpha
Helix 8	AA8	A	295	309	Right-handed alpha
Helix 9	AA9	A	327	352	Right-handed alpha
Helix 10	AB1	B	6	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	C	10	24	Right-handed alpha
Helix 13	AB4	C	29	44	Right-handed alpha
Helix 14	AB5	E	28	32	Right-handed 310
Helix 15	AB6	E	87	91	Right-handed 310
Helix 16	AB7	E	221	225	Right-handed 310
Helix 17	AB8	R	67	96	Right-handed alpha
Helix 18	AB9	R	103	121	Right-handed alpha
Helix 19	AC1	R	122	132	Right-handed alpha
Helix 20	AC2	R	137	173	Right-handed alpha
Helix 21	AC3	R	173	181	Right-handed alpha
Helix 22	AC4	R	182	197	Right-handed alpha
Helix 23	AC5	R	197	206	Right-handed alpha
Helix 24	AC6	R	227	243	Right-handed alpha
Helix 25	AC7	R	243	264	Right-handed alpha
Helix 26	AC8	R	265	268	Right-handed 310
Helix 27	AC9	R	270	308	Right-handed alpha
Helix 28	AD1	R	313	339	Right-handed alpha
Helix 29	AD2	R	342	350	Right-handed alpha

There are 14 sheets in PDB entry 8Y72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	110	111	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	142	first strand
Strand 2	E	156	162	anti-parallel
Strand 3	E	212	217	anti-parallel
Strand 4	E	204	209	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	149	first strand
Strand 2	E	244	247	parallel
Strand 3	E	227	232	anti-parallel
Strand 4	E	175	180	anti-parallel
Strand 5	E	187	191	anti-parallel
Strand 6	E	195	196	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	211	213	first strand
Strand 2	R	216	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y72

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y72