Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y75

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y75 entry

There are 4 chains in PDB entry 8Y75 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 305
B	LYS 2	LEU 305
C	MET 1	LEU 305
D	MET 1	PRO 304

There are 54 helices in PDB entry 8Y75. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	46	Right-handed alpha
Helix 2	AA2	A	57	64	Right-handed alpha
Helix 3	AA3	A	70	83	Right-handed alpha
Helix 4	AA4	A	84	87	Right-handed 310
Helix 5	AA5	A	100	118	Right-handed alpha
Helix 6	AA6	A	131	153	Right-handed alpha
Helix 7	AA7	A	164	167	Right-handed 310
Helix 8	AA8	A	182	188	Right-handed alpha
Helix 9	AA9	A	188	202	Right-handed alpha
Helix 10	AB1	A	204	219	Right-handed alpha
Helix 11	AB2	A	225	230	Right-handed alpha
Helix 12	AB3	A	230	247	Right-handed alpha
Helix 13	AB4	A	250	278	Right-handed alpha
Helix 14	AB5	A	285	302	Right-handed alpha
Helix 15	AB6	B	34	46	Right-handed alpha
Helix 16	AB7	B	57	64	Right-handed alpha
Helix 17	AB8	B	70	83	Right-handed alpha
Helix 18	AB9	B	84	87	Right-handed 310
Helix 19	AC1	B	100	118	Right-handed alpha
Helix 20	AC2	B	131	154	Right-handed alpha
Helix 21	AC3	B	164	167	Right-handed 310
Helix 22	AC4	B	182	202	Right-handed alpha
Helix 23	AC5	B	204	219	Right-handed alpha
Helix 24	AC6	B	225	230	Right-handed alpha
Helix 25	AC7	B	230	247	Right-handed alpha
Helix 26	AC8	B	250	276	Right-handed alpha
Helix 27	AC9	B	285	301	Right-handed alpha
Helix 28	AD1	C	34	46	Right-handed alpha
Helix 29	AD2	C	57	64	Right-handed alpha
Helix 30	AD3	C	70	84	Right-handed alpha
Helix 31	AD4	C	85	87	Right-handed 310
Helix 32	AD5	C	100	118	Right-handed alpha
Helix 33	AD6	C	131	153	Right-handed alpha
Helix 34	AD7	C	164	167	Right-handed 310
Helix 35	AD8	C	182	202	Right-handed alpha
Helix 36	AD9	C	204	220	Right-handed alpha
Helix 37	AE1	C	225	229	Right-handed 310
Helix 38	AE2	C	230	247	Right-handed alpha
Helix 39	AE3	C	250	276	Right-handed alpha
Helix 40	AE4	C	285	302	Right-handed alpha
Helix 41	AE5	D	34	46	Right-handed alpha
Helix 42	AE6	D	58	64	Right-handed alpha
Helix 43	AE7	D	70	84	Right-handed alpha
Helix 44	AE8	D	85	87	Right-handed 310
Helix 45	AE9	D	100	118	Right-handed alpha
Helix 46	AF1	D	131	149	Right-handed alpha
Helix 47	AF2	D	164	167	Right-handed 310
Helix 48	AF3	D	182	188	Right-handed alpha
Helix 49	AF4	D	188	201	Right-handed alpha
Helix 50	AF5	D	204	220	Right-handed alpha
Helix 51	AF6	D	225	229	Right-handed 310
Helix 52	AF7	D	230	247	Right-handed alpha
Helix 53	AF8	D	255	276	Right-handed alpha
Helix 54	AF9	D	285	302	Right-handed alpha

There are 8 sheets in PDB entry 8Y75. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	18	22	anti-parallel
Strand 3	A	174	181	parallel
Strand 4	A	156	162	anti-parallel
Strand 5	A	122	126	parallel
Strand 6	A	3	9	parallel
Strand 7	A	49	56	parallel
Strand 8	A	89	94	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	18	22	anti-parallel
Strand 3	A	174	181	parallel
Strand 4	A	168	171	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	32	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	174	181	parallel
Strand 4	B	156	162	anti-parallel
Strand 5	B	122	126	parallel
Strand 6	B	3	9	parallel
Strand 7	B	49	56	parallel
Strand 8	B	89	94	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	32	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	174	181	parallel
Strand 4	B	168	171	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	32	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	C	174	181	parallel
Strand 4	C	156	162	anti-parallel
Strand 5	C	122	126	parallel
Strand 6	C	3	9	parallel
Strand 7	C	49	56	parallel
Strand 8	C	89	94	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	32	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	C	174	181	parallel
Strand 4	C	168	171	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	174	181	parallel
Strand 4	D	156	162	anti-parallel
Strand 5	D	122	126	parallel
Strand 6	D	3	9	parallel
Strand 7	D	49	57	parallel
Strand 8	D	89	95	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	32	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	174	181	parallel
Strand 4	D	168	171	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y75

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y75