Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y7E entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 19 chains in PDB entry 8Y7E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 193	U 222
1	TYR 101	ILE 128
1	PRO 130	LEU 1304
2	ASN 458	GLU 712
3	MET 1	ASN 612
3	VAL 614	PHE 1217
4	ASP 12	ALA 89
5	ARG 12	ASN 120
6	ALA 2	GLY 106
7	MET 1	ASP 81
H	A 14	C 84
h	GLY 4	SER 85
i	GLY 4	ASP 89
j	MET 1	ASP 82
k	GLU 20	ALA 116
l	MET 14	ASN 92
m	SER 2	VAL 75
n	ALA 4	VAL 76
v	MET 1	ASP 226

There are120 helices in PDB entry 8Y7E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	102	107	Right-handed 310
Helix 2	AA2	1	119	125	Right-handed 310
Helix 3	AA3	1	136	141	Right-handed alpha
Helix 4	AA4	1	151	176	Right-handed alpha
Helix 5	AA5	1	400	405	Right-handed alpha
Helix 6	AA6	1	406	408	Right-handed 310
Helix 7	AA7	1	451	456	Right-handed alpha
Helix 8	AA8	1	468	472	Right-handed 310
Helix 9	AA9	1	475	479	Right-handed 310
Helix 10	AB1	1	488	507	Right-handed alpha
Helix 11	AB2	1	508	522	Right-handed alpha
Helix 12	AB3	1	522	527	Right-handed alpha
Helix 13	AB4	1	527	540	Right-handed alpha
Helix 14	AB5	1	545	563	Right-handed alpha
Helix 15	AB6	1	567	569	Right-handed 310
Helix 16	AB7	1	570	579	Right-handed alpha
Helix 17	AB8	1	580	584	Right-handed 310
Helix 18	AB9	1	586	605	Right-handed alpha
Helix 19	AC1	1	605	614	Right-handed alpha
Helix 20	AC2	1	615	618	Right-handed 310
Helix 21	AC3	1	621	640	Right-handed alpha
Helix 22	AC4	1	640	653	Right-handed alpha
Helix 23	AC5	1	657	676	Right-handed alpha
Helix 24	AC6	1	677	681	Right-handed 310
Helix 25	AC7	1	682	691	Right-handed alpha
Helix 26	AC8	1	692	694	Right-handed 310
Helix 27	AC9	1	698	716	Right-handed alpha
Helix 28	AD1	1	727	738	Right-handed alpha
Helix 29	AD2	1	741	757	Right-handed alpha
Helix 30	AD3	1	758	777	Right-handed alpha
Helix 31	AD4	1	781	798	Right-handed alpha
Helix 32	AD5	1	802	810	Right-handed alpha
Helix 33	AD6	1	810	818	Right-handed alpha
Helix 34	AD7	1	826	845	Right-handed alpha
Helix 35	AD8	1	845	854	Right-handed alpha
Helix 36	AD9	1	855	859	Right-handed 310
Helix 37	AE1	1	861	880	Right-handed alpha
Helix 38	AE2	1	885	901	Right-handed alpha
Helix 39	AE3	1	908	922	Right-handed alpha
Helix 40	AE4	1	923	927	Right-handed 310
Helix 41	AE5	1	928	940	Right-handed alpha
Helix 42	AE6	1	944	958	Right-handed alpha
Helix 43	AE7	1	958	965	Right-handed alpha
Helix 44	AE8	1	967	981	Right-handed alpha
Helix 45	AE9	1	982	984	Right-handed 310
Helix 46	AF1	1	986	1005	Right-handed alpha
Helix 47	AF2	1	1012	1021	Right-handed alpha
Helix 48	AF3	1	1022	1026	Right-handed 310
Helix 49	AF4	1	1028	1046	Right-handed alpha
Helix 50	AF5	1	1047	1050	Right-handed 310
Helix 51	AF6	1	1051	1062	Right-handed alpha
Helix 52	AF7	1	1063	1068	Right-handed 310
Helix 53	AF8	1	1070	1089	Right-handed alpha
Helix 54	AF9	1	1089	1100	Right-handed alpha
Helix 55	AG1	1	1101	1103	Right-handed 310
Helix 56	AG2	1	1105	1123	Right-handed alpha
Helix 57	AG3	1	1124	1135	Right-handed alpha
Helix 58	AG4	1	1136	1138	Right-handed 310
Helix 59	AG5	1	1140	1159	Right-handed alpha
Helix 60	AG6	1	1160	1164	Right-handed 310
Helix 61	AG7	1	1165	1178	Right-handed alpha
Helix 62	AG8	1	1181	1199	Right-handed alpha
Helix 63	AG9	1	1204	1216	Right-handed alpha
Helix 64	AH1	1	1217	1221	Right-handed 310
Helix 65	AH2	1	1223	1242	Right-handed alpha
Helix 66	AH3	1	1242	1251	Right-handed alpha
Helix 67	AH4	1	1252	1254	Right-handed 310
Helix 68	AH5	1	1258	1276	Right-handed alpha
Helix 69	AH6	1	1278	1283	Right-handed 310
Helix 70	AH7	2	461	469	Right-handed alpha
Helix 71	AH8	2	478	482	Right-handed 310
Helix 72	AH9	2	484	493	Right-handed alpha
Helix 73	AI1	2	501	505	Right-handed 310
Helix 74	AI2	2	513	519	Right-handed 310
Helix 75	AI3	2	525	530	Right-handed alpha
Helix 76	AI4	2	532	544	Right-handed alpha
Helix 77	AI5	2	548	555	Right-handed alpha
Helix 78	AI6	2	567	577	Right-handed alpha
Helix 79	AI7	2	612	613	Right-handed 310
Helix 80	AI8	2	615	617	Right-handed 310
Helix 81	AI9	2	632	640	Right-handed alpha
Helix 82	AJ1	2	691	703	Right-handed alpha
Helix 83	AJ2	3	191	195	Right-handed 310
Helix 84	AJ3	3	198	204	Right-handed alpha
Helix 85	AJ4	3	429	432	Right-handed 310
Helix 86	AJ5	3	808	827	Right-handed alpha
Helix 87	AJ6	3	834	845	Right-handed alpha
Helix 88	AJ7	3	848	853	Right-handed alpha
Helix 89	AJ8	3	1134	1152	Right-handed alpha
Helix 90	AJ9	3	1159	1164	Right-handed alpha
Helix 91	AK1	3	1176	1180	Right-handed alpha
Helix 92	AK2	3	1181	1185	Right-handed 310
Helix 93	AK3	3	1186	1197	Right-handed alpha
Helix 94	AK4	3	1200	1216	Right-handed alpha
Helix 95	AK5	4	25	35	Right-handed alpha
Helix 96	AK6	4	63	77	Right-handed alpha
Helix 97	AK7	5	31	40	Right-handed alpha
Helix 98	AK8	5	66	78	Right-handed alpha
Helix 99	AK9	5	102	118	Right-handed alpha
Helix 100	AL1	6	46	55	Right-handed 310
Helix 101	AL2	6	73	78	Right-handed alpha
Helix 102	AL3	6	79	83	Right-handed 310
Helix 103	AL4	6	91	106	Right-handed alpha
Helix 104	AL5	7	2	18	Right-handed alpha
Helix 105	AL6	7	27	46	Right-handed alpha
Helix 106	AL7	7	46	57	Right-handed alpha
Helix 107	AL8	7	60	72	Right-handed alpha
Helix 108	AL9	h	5	13	Right-handed alpha
Helix 109	AM1	i	6	11	Right-handed alpha
Helix 110	AM2	j	2	9	Right-handed alpha
Helix 111	AM3	j	75	81	Right-handed alpha
Helix 112	AM4	k	21	27	Right-handed alpha
Helix 113	AM5	k	29	39	Right-handed alpha
Helix 114	AM6	l	16	28	Right-handed alpha
Helix 115	AM7	m	6	15	Right-handed alpha
Helix 116	AM8	n	9	13	Right-handed 310
Helix 117	AM9	v	9	27	Right-handed alpha
Helix 118	AN1	v	55	64	Right-handed alpha
Helix 119	AN2	v	65	74	Right-handed alpha
Helix 120	AN3	v	184	199	Right-handed alpha

There are 31 sheets in PDB entry 8Y7E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	412	414	first strand
Strand 2	5	45	51	anti-parallel
Strand 3	5	60	64	anti-parallel
Strand 4	5	20	24	anti-parallel
Strand 5	5	88	91	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	1101	1108	first strand
Strand 2	3	1115	1121	anti-parallel
Strand 3	3	1126	1131	anti-parallel
Strand 4	3	3	9	anti-parallel
Strand 5	3	1173	1175	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	16	20	first strand
Strand 2	3	29	33	anti-parallel
Strand 3	3	37	43	anti-parallel
Strand 4	3	50	57	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	62	68	first strand
Strand 2	3	77	82	anti-parallel
Strand 3	3	86	93	anti-parallel
Strand 4	3	98	106	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	120	123	first strand
Strand 2	3	129	133	anti-parallel
Strand 3	3	139	146	anti-parallel
Strand 4	3	152	154	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	120	123	first strand
Strand 2	3	129	133	anti-parallel
Strand 3	3	139	146	anti-parallel
Strand 4	3	158	160	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	165	173	first strand
Strand 2	3	181	188	anti-parallel
Strand 3	3	207	214	anti-parallel
Strand 4	3	219	227	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	232	237	first strand
Strand 2	3	248	252	anti-parallel
Strand 3	3	255	259	anti-parallel
Strand 4	3	267	270	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	273	274	first strand
Strand 2	3	386	387	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	287	294	first strand
Strand 2	3	299	305	anti-parallel
Strand 3	3	309	318	anti-parallel
Strand 4	3	321	332	anti-parallel
Strand 5	3	373	374	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	336	342	first strand
Strand 2	3	346	351	anti-parallel
Strand 3	3	356	361	anti-parallel
Strand 4	3	395	401	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	407	413	first strand
Strand 2	3	422	427	anti-parallel
Strand 3	3	434	440	anti-parallel
Strand 4	3	774	780	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	445	450	first strand
Strand 2	3	762	766	anti-parallel
Strand 3	3	753	757	anti-parallel
Strand 4	3	741	745	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	456	462	first strand
Strand 2	3	473	478	anti-parallel
Strand 3	3	482	486	anti-parallel
Strand 4	3	492	493	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	507	509	first strand
Strand 2	3	516	520	anti-parallel
Strand 3	3	523	527	anti-parallel
Strand 4	3	533	537	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	544	549	first strand
Strand 2	3	553	558	anti-parallel
Strand 3	3	562	568	anti-parallel
Strand 4	3	574	576	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	587	592	first strand
Strand 2	3	604	609	anti-parallel
Strand 3	3	613	619	anti-parallel
Strand 4	3	624	632	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	637	645	first strand
Strand 2	3	662	669	anti-parallel
Strand 3	3	673	678	anti-parallel
Strand 4	3	689	693	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	700	703	first strand
Strand 2	3	712	715	anti-parallel
Strand 3	3	719	725	anti-parallel
Strand 4	3	728	732	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	784	790	first strand
Strand 2	3	797	804	anti-parallel
Strand 3	3	862	869	anti-parallel
Strand 4	3	876	881	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	886	895	first strand
Strand 2	3	903	911	anti-parallel
Strand 3	3	922	931	anti-parallel
Strand 4	3	936	945	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	949	955	first strand
Strand 2	3	958	963	anti-parallel
Strand 3	3	966	972	anti-parallel
Strand 4	3	977	983	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	990	996	first strand
Strand 2	3	999	1004	anti-parallel
Strand 3	3	1009	1015	anti-parallel
Strand 4	3	1020	1026	anti-parallel
Strand 5	3	1087	1088	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	1033	1038	first strand
Strand 2	3	1043	1048	anti-parallel
Strand 3	3	1052	1057	anti-parallel
Strand 4	3	1090	1096	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	41	43	first strand
Strand 2	4	57	60	anti-parallel
Strand 3	4	15	17	anti-parallel
Strand 4	4	87	88	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	81	82	first strand
Strand 2	5	85	86	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	18	19	first strand
Strand 2	6	44	45	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	21	22	first strand
Strand 2	6	67	68	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	39	42	first strand
Strand 2	6	70	72	anti-parallel

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There are 36 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	17	22	first strand
Strand 2	h	27	35	anti-parallel
Strand 3	h	41	49	anti-parallel
Strand 4	h	55	63	anti-parallel
Strand 5	n	67	72	anti-parallel
Strand 6	n	16	21	anti-parallel
Strand 7	n	25	34	anti-parallel
Strand 8	n	40	47	anti-parallel
Strand 9	n	55	62	anti-parallel
Strand 10	l	84	90	anti-parallel
Strand 11	l	30	35	anti-parallel
Strand 12	l	38	50	anti-parallel
Strand 13	l	56	65	anti-parallel
Strand 14	l	70	79	anti-parallel
Strand 15	m	69	74	anti-parallel
Strand 16	m	18	23	anti-parallel
Strand 17	m	28	36	anti-parallel
Strand 18	m	42	51	anti-parallel
Strand 19	m	54	64	anti-parallel
Strand 20	k	106	111	anti-parallel
Strand 21	k	41	46	anti-parallel
Strand 22	k	51	59	anti-parallel
Strand 23	k	65	75	anti-parallel
Strand 24	k	91	101	anti-parallel
Strand 25	j	65	69	anti-parallel
Strand 26	j	14	19	anti-parallel
Strand 27	j	24	32	anti-parallel
Strand 28	j	38	46	anti-parallel
Strand 29	j	53	60	anti-parallel
Strand 30	i	77	84	anti-parallel
Strand 31	i	16	21	anti-parallel
Strand 32	i	26	33	anti-parallel
Strand 33	i	40	48	anti-parallel
Strand 34	i	64	72	anti-parallel
Strand 35	h	68	73	anti-parallel
Strand 36	h	17	22	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	34	36	first strand
Strand 2	v	42	44	anti-parallel
Strand 3	v	52	53	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y7E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7E