Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y7F entry

There are 2 chains in PDB entry 8Y7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 185GLY 563
B
 THR 185GLY 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8Y7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
187 202Right-handed alpha
Helix 2
AA2
A
204 222Right-handed alpha
Helix 3
AA3
A
223 226Right-handed 310
Helix 4
AA4
A
227 247Right-handed alpha
Helix 5
AA5
A
250 275Right-handed alpha
Helix 6
AA6
A
278 303Right-handed alpha
Helix 7
AA7
A
308 313Right-handed 310
Helix 8
AA8
A
317 334Right-handed alpha
Helix 9
AA9
A
336 356Right-handed alpha
Helix 10
AB1
A
358 362Right-handed 310
Helix 11
AB2
A
364 374Right-handed alpha
Helix 12
AB3
A
385 406Right-handed alpha
Helix 13
AB4
A
415 438Right-handed alpha
Helix 14
AB5
A
472 486Right-handed alpha
Helix 15
AB6
A
495 507Right-handed alpha
Helix 16
AB7
A
541 551Right-handed alpha
Helix 17
AB8
B
187 202Right-handed alpha
Helix 18
AB9
B
204 219Right-handed alpha
Helix 19
AC1
B
230 247Right-handed alpha
Helix 20
AC2
B
250 274Right-handed alpha
Helix 21
AC3
B
287 303Right-handed alpha
Helix 22
AC4
B
308 313Right-handed 310
Helix 23
AC5
B
317 334Right-handed alpha
Helix 24
AC6
B
336 356Right-handed alpha
Helix 25
AC7
B
358 362Right-handed 310
Helix 26
AC8
B
364 374Right-handed alpha
Helix 27
AC9
B
384 406Right-handed alpha
Helix 28
AD1
B
415 438Right-handed alpha
Helix 29
AD2
B
472 486Right-handed alpha
Helix 30
AD3
B
495 507Right-handed alpha
Helix 31
AD4
B
541 551Right-handed alpha
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There are 2 sheets in PDB entry 8Y7F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 471first strand
Strand 2
A
554 561anti-parallel
Strand 3
A
524 530anti-parallel
Strand 4
A
447 450parallel
Strand 5
A
489 491parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
465 471first strand
Strand 2
B
554 563anti-parallel
Strand 3
B
524 530anti-parallel
Strand 4
B
447 450parallel
Strand 5
B
489 491parallel
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