Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y7G entry

There are 5 chains in PDB entry 8Y7G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 563
B
 LYS 2GLY 563
C
 A 1 A 4
D
 A 1 A 2
E
 A 1 A 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 8Y7G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
57 64Right-handed alpha
Helix 4
AA4
A
70 83Right-handed alpha
Helix 5
AA5
A
100 118Right-handed alpha
Helix 6
AA6
A
131 147Right-handed alpha
Helix 7
AA7
A
164 167Right-handed 310
Helix 8
AA8
A
183 202Right-handed alpha
Helix 9
AA9
A
204 222Right-handed alpha
Helix 10
AB1
A
230 247Right-handed alpha
Helix 11
AB2
A
250 273Right-handed alpha
Helix 12
AB3
A
285 299Right-handed alpha
Helix 13
AB4
A
300 303Right-handed 310
Helix 14
AB5
A
308 312Right-handed 310
Helix 15
AB6
A
317 334Right-handed alpha
Helix 16
AB7
A
336 356Right-handed alpha
Helix 17
AB8
A
358 362Right-handed 310
Helix 18
AB9
A
364 374Right-handed alpha
Helix 19
AC1
A
386 406Right-handed alpha
Helix 20
AC2
A
415 440Right-handed alpha
Helix 21
AC3
A
472 486Right-handed alpha
Helix 22
AC4
A
495 507Right-handed alpha
Helix 23
AC5
A
541 551Right-handed alpha
Helix 24
AC6
B
34 45Right-handed alpha
Helix 25
AC7
B
58 64Right-handed alpha
Helix 26
AC8
B
70 84Right-handed alpha
Helix 27
AC9
B
85 87Right-handed 310
Helix 28
AD1
B
100 118Right-handed alpha
Helix 29
AD2
B
131 148Right-handed alpha
Helix 30
AD3
B
183 202Right-handed alpha
Helix 31
AD4
B
204 222Right-handed alpha
Helix 32
AD5
B
230 247Right-handed alpha
Helix 33
AD6
B
250 274Right-handed alpha
Helix 34
AD7
B
285 299Right-handed alpha
Helix 35
AD8
B
300 303Right-handed 310
Helix 36
AD9
B
308 313Right-handed 310
Helix 37
AE1
B
317 334Right-handed alpha
Helix 38
AE2
B
336 356Right-handed alpha
Helix 39
AE3
B
357 362Right-handed 310
Helix 40
AE4
B
364 374Right-handed alpha
Helix 41
AE5
B
384 406Right-handed alpha
Helix 42
AE6
B
415 440Right-handed alpha
Helix 43
AE7
B
472 486Right-handed alpha
Helix 44
AE8
B
495 507Right-handed alpha
Helix 45
AE9
B
541 551Right-handed alpha
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There are 3 sheets in PDB entry 8Y7G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
18 22anti-parallel
Strand 3
A
178 181parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
122 126parallel
Strand 6
A
3 9parallel
Strand 7
A
49 55parallel
Strand 8
A
89 93parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 491first strand
Strand 2
A
447 450parallel
Strand 3
A
524 530parallel
Strand 4
A
554 563anti-parallel
Strand 5
A
463 471anti-parallel
Strand 6
B
463 471anti-parallel
Strand 7
B
554 563anti-parallel
Strand 8
B
524 530anti-parallel
Strand 9
B
447 450parallel
Strand 10
B
489 491parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
176 181parallel
Strand 4
B
156 162anti-parallel
Strand 5
B
122 126parallel
Strand 6
B
3 9parallel
Strand 7
B
49 57parallel
Strand 8
B
92 95parallel
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