Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y7M entry

There are 4 chains in PDB entry 8Y7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLU 203	ARG 716
F	MET 1	ASN 671
G	SER 44	LYS 126
A	MET 1	ARG 82

There are134 helices in PDB entry 8Y7M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	209	217	Right-handed alpha
Helix 2	AA2	E	225	235	Right-handed alpha
Helix 3	AA3	E	241	249	Right-handed alpha
Helix 4	AA4	E	302	312	Right-handed alpha
Helix 5	AA5	E	330	347	Right-handed alpha
Helix 6	AA6	E	363	371	Right-handed alpha
Helix 7	AA7	E	383	387	Right-handed 310
Helix 8	AA8	E	405	415	Right-handed alpha
Helix 9	AA9	E	433	451	Right-handed alpha
Helix 10	AB1	E	453	476	Right-handed alpha
Helix 11	AB2	E	533	537	Right-handed 310
Helix 12	AB3	E	572	579	Right-handed alpha
Helix 13	AB4	E	582	603	Right-handed alpha
Helix 14	AB5	E	608	613	Right-handed alpha
Helix 15	AB6	E	632	650	Right-handed alpha
Helix 16	AB7	E	652	674	Right-handed alpha
Helix 17	AB8	E	682	693	Right-handed alpha
Helix 18	AB9	E	697	714	Right-handed alpha
Helix 19	AC1	F	6	12	Right-handed alpha
Helix 20	AC2	F	17	22	Right-handed 310
Helix 21	AC3	F	35	49	Right-handed alpha
Helix 22	AC4	F	84	99	Right-handed alpha
Helix 23	AC5	F	101	116	Right-handed alpha
Helix 24	AC6	F	118	124	Right-handed 310
Helix 25	AC7	F	138	152	Right-handed alpha
Helix 26	AC8	F	157	161	Right-handed 310
Helix 27	AC9	F	163	176	Right-handed alpha
Helix 28	AD1	F	213	221	Right-handed alpha
Helix 29	AD2	F	248	264	Right-handed alpha
Helix 30	AD3	F	275	290	Right-handed alpha
Helix 31	AD4	F	309	313	Right-handed 310
Helix 32	AD5	F	314	326	Right-handed alpha
Helix 33	AD6	F	330	345	Right-handed alpha
Helix 34	AD7	F	372	376	Right-handed 310
Helix 35	AD8	F	382	393	Right-handed alpha
Helix 36	AD9	F	415	426	Right-handed alpha
Helix 37	AE1	F	428	433	Right-handed alpha
Helix 38	AE2	F	455	474	Right-handed alpha
Helix 39	AE3	F	520	537	Right-handed alpha
Helix 40	AE4	F	540	560	Right-handed alpha
Helix 41	AE5	F	572	583	Right-handed alpha
Helix 42	AE6	F	585	589	Right-handed 310
Helix 43	AE7	F	590	594	Right-handed 310
Helix 44	AE8	F	600	604	Right-handed 310
Helix 45	AE9	F	607	613	Right-handed alpha
Helix 46	AF1	F	614	616	Right-handed 310
Helix 47	AF2	F	617	625	Right-handed alpha
Helix 48	AF3	G	46	51	Right-handed alpha
Helix 49	AF4	G	62	67	Right-handed alpha
Helix 50	AF5	G	92	102	Right-handed alpha
Helix 51	AF6	G	112	114	Right-handed 310
Helix 52	AF7	G	115	126	Right-handed alpha
Helix 53	AF8	A	2	9	Right-handed alpha
Helix 54	AF9	A	10	25	Right-handed alpha
Helix 55	AG1	A	32	49	Right-handed alpha
Helix 56	AG2	A	83	99	Right-handed alpha
Helix 57	AG3	A	126	138	Right-handed alpha
Helix 58	AG4	A	158	160	Right-handed 310
Helix 59	AG5	A	164	184	Right-handed alpha
Helix 60	AG6	A	187	193	Right-handed alpha
Helix 61	AG7	A	209	217	Right-handed alpha
Helix 62	AG8	A	225	235	Right-handed alpha
Helix 63	AG9	A	240	248	Right-handed alpha
Helix 64	AH1	A	302	313	Right-handed alpha
Helix 65	AH2	A	330	347	Right-handed alpha
Helix 66	AH3	A	348	350	Right-handed 310
Helix 67	AH4	A	363	371	Right-handed alpha
Helix 68	AH5	A	405	414	Right-handed alpha
Helix 69	AH6	A	433	451	Right-handed alpha
Helix 70	AH7	A	453	476	Right-handed alpha
Helix 71	AH8	A	572	579	Right-handed alpha
Helix 72	AH9	A	582	603	Right-handed alpha
Helix 73	AI1	A	608	613	Right-handed alpha
Helix 74	AI2	A	632	650	Right-handed alpha
Helix 75	AI3	A	652	674	Right-handed alpha
Helix 76	AI4	A	682	693	Right-handed alpha
Helix 77	AI5	A	697	715	Right-handed alpha
Helix 78	AI6	B	5	11	Right-handed 310
Helix 79	AI7	B	13	21	Right-handed 310
Helix 80	AI8	B	35	49	Right-handed alpha
Helix 81	AI9	B	84	99	Right-handed alpha
Helix 82	AJ1	B	101	117	Right-handed alpha
Helix 83	AJ2	B	118	124	Right-handed 310
Helix 84	AJ3	B	138	153	Right-handed alpha
Helix 85	AJ4	B	157	161	Right-handed 310
Helix 86	AJ5	B	162	174	Right-handed alpha
Helix 87	AJ6	B	213	221	Right-handed alpha
Helix 88	AJ7	B	248	264	Right-handed alpha
Helix 89	AJ8	B	275	290	Right-handed alpha
Helix 90	AJ9	B	309	313	Right-handed 310
Helix 91	AK1	B	314	326	Right-handed alpha
Helix 92	AK2	B	330	346	Right-handed alpha
Helix 93	AK3	B	371	373	Right-handed 310
Helix 94	AK4	B	382	393	Right-handed alpha
Helix 95	AK5	B	412	426	Right-handed alpha
Helix 96	AK6	B	428	433	Right-handed alpha
Helix 97	AK7	B	455	474	Right-handed alpha
Helix 98	AK8	B	520	536	Right-handed alpha
Helix 99	AK9	B	540	560	Right-handed alpha
Helix 100	AL1	B	572	583	Right-handed alpha
Helix 101	AL2	B	590	594	Right-handed 310
Helix 102	AL3	B	600	604	Right-handed 310
Helix 103	AL4	B	607	613	Right-handed alpha
Helix 104	AL5	B	614	616	Right-handed 310
Helix 105	AL6	B	617	625	Right-handed alpha
Helix 106	AL7	B	687	698	Right-handed alpha
Helix 107	AL8	B	700	705	Right-handed 310
Helix 108	AL9	B	713	732	Right-handed alpha
Helix 109	AM1	B	737	755	Right-handed alpha
Helix 110	AM2	C	2	11	Right-handed alpha
Helix 111	AM3	C	13	23	Right-handed alpha
Helix 112	AM4	C	24	26	Right-handed 310
Helix 113	AM5	C	27	32	Right-handed alpha
Helix 114	AM6	C	42	51	Right-handed alpha
Helix 115	AM7	C	60	66	Right-handed 310
Helix 116	AM8	C	92	102	Right-handed alpha
Helix 117	AM9	C	110	115	Right-handed alpha
Helix 118	AN1	C	115	127	Right-handed alpha
Helix 119	AN2	C	155	168	Right-handed alpha
Helix 120	AN3	C	183	193	Right-handed alpha
Helix 121	AN4	C	199	212	Right-handed alpha
Helix 122	AN5	C	225	230	Right-handed alpha
Helix 123	AN6	C	231	236	Right-handed alpha
Helix 124	AN7	C	709	713	Right-handed 310
Helix 125	AN8	C	744	754	Right-handed 310
Helix 126	AN9	I	6	18	Right-handed alpha
Helix 127	AO1	I	26	89	Right-handed alpha
Helix 128	AO2	I	92	121	Right-handed alpha
Helix 129	AO3	J	6	22	Right-handed alpha
Helix 130	AO4	J	25	50	Right-handed alpha
Helix 131	AO5	J	54	59	Right-handed alpha
Helix 132	AO6	J	63	66	Right-handed 310
Helix 133	AO7	J	67	90	Right-handed alpha
Helix 134	AO8	J	93	121	Right-handed alpha

There are 24 sheets in PDB entry 8Y7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	679	680	anti-parallel
Strand 3	F	477	486	anti-parallel
Strand 4	F	298	306	anti-parallel
Strand 5	F	446	453	anti-parallel
Strand 6	F	437	442	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	317	324	first strand
Strand 2	E	541	548	anti-parallel
Strand 3	E	559	569	anti-parallel
Strand 4	E	519	526	anti-parallel
Strand 5	E	496	506	anti-parallel
Strand 6	E	481	490	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	391	first strand
Strand 2	F	354	359	anti-parallel
Strand 3	F	365	369	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	628	631	first strand
Strand 2	E	619	623	anti-parallel
Strand 3	F	2	3	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	57	first strand
Strand 2	F	64	66	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	129	130	first strand
Strand 2	F	135	136	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	224	first strand
Strand 2	F	348	349	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	490	492	first strand
Strand 2	F	495	497	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	89	91	anti-parallel
Strand 3	G	78	79	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	60	61	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	116	123	anti-parallel
Strand 3	A	143	149	parallel
Strand 4	A	154	156	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	679	680	anti-parallel
Strand 3	B	483	486	anti-parallel
Strand 4	B	298	305	anti-parallel
Strand 5	B	446	453	anti-parallel
Strand 6	B	437	442	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	324	first strand
Strand 2	A	541	550	anti-parallel
Strand 3	A	557	569	anti-parallel
Strand 4	A	519	526	anti-parallel
Strand 5	A	496	506	anti-parallel
Strand 6	A	480	490	anti-parallel
Strand 7	A	359	360	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel
Strand 4	A	390	391	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	619	623	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	208	212	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	348	350	parallel
Strand 3	B	400	402	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	490	491	first strand
Strand 2	B	496	497	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	89	91	anti-parallel
Strand 3	C	78	79	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	135	first strand
Strand 2	C	240	245	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	214	218	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	699	first strand
Strand 2	C	730	736	anti-parallel
Strand 3	C	721	726	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7M