Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y7P entry

There are 2 chains in PDB entry 8Y7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 364
B
 LEU 2ALA 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8Y7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
35 47Right-handed alpha
Helix 3
AA3
A
54 60Right-handed alpha
Helix 4
AA4
A
72 74Right-handed 310
Helix 5
AA5
A
75 86Right-handed alpha
Helix 6
AA6
A
97 111Right-handed alpha
Helix 7
AA7
A
120 124Right-handed 310
Helix 8
AA8
A
125 138Right-handed alpha
Helix 9
AA9
A
161 169Right-handed 310
Helix 10
AB1
A
171 176Right-handed alpha
Helix 11
AB2
A
176 189Right-handed alpha
Helix 12
AB3
A
299 318Right-handed alpha
Helix 13
AB4
A
337 357Right-handed alpha
Helix 14
AB5
B
10 24Right-handed alpha
Helix 15
AB6
B
35 47Right-handed alpha
Helix 16
AB7
B
54 61Right-handed alpha
Helix 17
AB8
B
72 74Right-handed 310
Helix 18
AB9
B
75 86Right-handed alpha
Helix 19
AC1
B
97 111Right-handed alpha
Helix 20
AC2
B
120 124Right-handed 310
Helix 21
AC3
B
125 137Right-handed alpha
Helix 22
AC4
B
161 169Right-handed 310
Helix 23
AC5
B
171 176Right-handed alpha
Helix 24
AC6
B
176 189Right-handed alpha
Helix 25
AC7
B
299 318Right-handed alpha
Helix 26
AC8
B
337 357Right-handed alpha
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There are 4 sheets in PDB entry 8Y7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 32first strand
Strand 2
A
4 9parallel
Strand 3
A
66 70parallel
Strand 4
A
89 92parallel
Strand 5
A
116 118parallel
Strand 6
A
335 336anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
264 269anti-parallel
Strand 3
A
256 261anti-parallel
Strand 4
A
246 252anti-parallel
Strand 5
A
145 151anti-parallel
Strand 6
A
232 238parallel
Strand 7
A
220 227anti-parallel
Strand 8
A
192 200anti-parallel
Strand 9
A
360 361anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
27 32parallel
Strand 3
B
4 9parallel
Strand 4
B
66 70parallel
Strand 5
B
89 92parallel
Strand 6
B
116 118parallel
Strand 7
B
335 336anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 280first strand
Strand 2
B
264 269anti-parallel
Strand 3
B
256 261anti-parallel
Strand 4
B
246 253anti-parallel
Strand 5
B
143 151anti-parallel
Strand 6
B
232 238parallel
Strand 7
B
220 227anti-parallel
Strand 8
B
192 200anti-parallel
Strand 9
B
360 361anti-parallel
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