Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y7R entry

There are 2 chains in PDB entry 8Y7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2VAL 249
B
 LYS 2VAL 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8Y7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
116 133Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
153 174Right-handed alpha
Helix 9
AA9
A
191 197Right-handed alpha
Helix 10
AB1
A
198 208Right-handed alpha
Helix 11
AB2
A
216 229Right-handed alpha
Helix 12
AB3
A
230 233Right-handed 310
Helix 13
AB4
A
245 249Right-handed 310
Helix 14
AB5
B
16 29Right-handed alpha
Helix 15
AB6
B
39 53Right-handed alpha
Helix 16
AB7
B
66 82Right-handed alpha
Helix 17
AB8
B
99 103Right-handed 310
Helix 18
AB9
B
104 116Right-handed alpha
Helix 19
AC1
B
116 133Right-handed alpha
Helix 20
AC2
B
143 147Right-handed 310
Helix 21
AC3
B
153 174Right-handed alpha
Helix 22
AC4
B
175 177Right-handed 310
Helix 23
AC5
B
198 208Right-handed alpha
Helix 24
AC6
B
216 229Right-handed alpha
Helix 25
AC7
B
230 233Right-handed 310
Helix 26
AC8
B
245 249Right-handed 310
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There are 2 sheets in PDB entry 8Y7R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
32 35parallel
Strand 3
A
8 11parallel
Strand 4
A
86 89parallel
Strand 5
A
136 141parallel
Strand 6
A
179 186parallel
Strand 7
A
239 242parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
86 89parallel
Strand 5
B
136 141parallel
Strand 6
B
179 186parallel
Strand 7
B
239 242parallel
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