Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y7V entry

There is 1 chain in PDB entry 8Y7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 64ILE 283
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 8Y7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
108 112Right-handed 310
Helix 2
AA2
A
126 134Right-handed alpha
Helix 3
AA3
A
134 139Right-handed alpha
Helix 4
AA4
A
192 196Right-handed 310
Helix 5
AA5
A
241 256Right-handed alpha
Helix 6
AA6
A
258 263Right-handed alpha
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There are 3 sheets in PDB entry 8Y7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
184 189anti-parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
67 71anti-parallel
Strand 5
A
272 273anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
224 238parallel
Strand 3
A
209 218anti-parallel
Strand 4
A
116 124anti-parallel
Strand 5
A
172 177anti-parallel
Strand 6
A
161 165anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
224 238parallel
Strand 3
A
275 276anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il