Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y7Y entry

There are 3 chains in PDB entry 8Y7Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 14	SER 284
T	ILE 256	ASP 491
B	ALA 315	ILE 671

There are 15 helices in PDB entry 8Y7Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	88	91	Right-handed 310
Helix 2	AA2	T	295	299	Right-handed 310
Helix 3	AA3	T	406	411	Right-handed alpha
Helix 4	AA4	T	476	491	Right-handed alpha
Helix 5	AA5	B	328	334	Right-handed alpha
Helix 6	AA6	B	341	344	Right-handed 310
Helix 7	AA7	B	355	363	Right-handed alpha
Helix 8	AA8	B	374	379	Right-handed 310
Helix 9	AA9	B	397	402	Right-handed 310
Helix 10	AB1	B	407	413	Right-handed alpha
Helix 11	AB2	B	442	448	Right-handed alpha
Helix 12	AB3	B	478	484	Right-handed alpha
Helix 13	AB4	B	529	533	Right-handed 310
Helix 14	AB5	B	553	556	Right-handed 310
Helix 15	AB6	B	570	572	Right-handed 310

There are 18 sheets in PDB entry 8Y7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	85	86	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	67	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	276	280	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	256	260	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	197	205	anti-parallel
Strand 5	A	208	214	anti-parallel
Strand 6	A	221	227	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	240	241	parallel
Strand 3	A	161	162	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	234	237	anti-parallel
Strand 3	A	124	127	anti-parallel
Strand 4	A	137	142	anti-parallel
Strand 5	A	145	148	anti-parallel
Strand 6	A	187	190	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	112	first strand
Strand 2	A	117	120	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	260	261	first strand
Strand 2	T	398	405	anti-parallel
Strand 3	T	424	427	anti-parallel
Strand 4	T	472	475	anti-parallel
Strand 5	T	452	461	anti-parallel
Strand 6	T	444	449	anti-parallel
Strand 7	T	378	383	anti-parallel
Strand 8	T	398	405	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	279	281	first strand
Strand 2	T	271	274	anti-parallel
Strand 3	T	309	312	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	284	287	first strand
Strand 2	T	290	293	anti-parallel
Strand 3	T	347	349	anti-parallel
Strand 4	T	332	333	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	624	626	parallel
Strand 3	B	629	631	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	435	437	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	385	392	anti-parallel
Strand 3	B	587	597	anti-parallel
Strand 4	B	422	430	anti-parallel
Strand 5	B	365	371	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	604	606	parallel
Strand 3	B	382	383	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	463	first strand
Strand 2	B	577	581	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	536	537	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	507	first strand
Strand 2	B	515	518	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	574	575	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	638	first strand
Strand 2	B	667	670	anti-parallel
Strand 3	B	657	662	anti-parallel
Strand 4	B	649	651	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y7Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7Y