Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y7Z entry

There are 4 chains in PDB entry 8Y7Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 5	MET 473
A	ALA 330	VAL 583
C	A 1	C 21
D	T 5	A 24

There are 26 helices in PDB entry 8Y7Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	29	38	Right-handed alpha
Helix 2	AA2	B	39	43	Right-handed 310
Helix 3	AA3	B	60	73	Right-handed alpha
Helix 4	AA4	B	89	95	Right-handed alpha
Helix 5	AA5	B	102	104	Right-handed 310
Helix 6	AA6	B	110	119	Right-handed alpha
Helix 7	AA7	B	121	132	Right-handed alpha
Helix 8	AA8	B	133	139	Right-handed alpha
Helix 9	AA9	B	151	157	Right-handed 310
Helix 10	AB1	B	165	173	Right-handed alpha
Helix 11	AB2	B	184	190	Right-handed alpha
Helix 12	AB3	B	192	208	Right-handed alpha
Helix 13	AB4	B	276	294	Right-handed alpha
Helix 14	AB5	B	312	323	Right-handed alpha
Helix 15	AB6	B	417	428	Right-handed alpha
Helix 16	AB7	B	443	459	Right-handed alpha
Helix 17	AB8	B	470	472	Right-handed 310
Helix 18	AB9	A	355	367	Right-handed alpha
Helix 19	AC1	A	383	391	Right-handed alpha
Helix 20	AC2	A	406	414	Right-handed alpha
Helix 21	AC3	A	414	430	Right-handed alpha
Helix 22	AC4	A	455	457	Right-handed 310
Helix 23	AC5	A	458	466	Right-handed alpha
Helix 24	AC6	A	513	519	Right-handed 310
Helix 25	AC7	A	520	529	Right-handed alpha
Helix 26	AC8	A	532	549	Right-handed alpha

There are 11 sheets in PDB entry 8Y7Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	365	368	anti-parallel
Strand 3	B	373	376	anti-parallel
Strand 4	B	407	411	anti-parallel
Strand 5	B	328	335	anti-parallel
Strand 6	B	302	307	parallel
Strand 7	B	222	233	parallel
Strand 8	B	238	248	anti-parallel
Strand 9	B	256	261	anti-parallel
Strand 10	B	467	468	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	19	21	anti-parallel
Strand 3	B	214	215	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	50	56	parallel
Strand 3	B	106	108	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	50	56	parallel
Strand 3	B	145	149	parallel
Strand 4	B	180	183	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	160	first strand
Strand 2	B	163	164	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	344	first strand
Strand 2	A	331	332	anti-parallel
Strand 3	A	579	580	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	394	395	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	500	511	anti-parallel
Strand 3	A	485	497	anti-parallel
Strand 4	A	443	447	anti-parallel
Strand 5	A	436	440	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	500	511	anti-parallel
Strand 3	A	485	497	anti-parallel
Strand 4	A	475	477	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	373	first strand
Strand 2	A	379	382	anti-parallel
Strand 3	A	343	350	anti-parallel
Strand 4	A	396	404	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	569	572	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y7Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y7Z