Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y83 entry

There are 2 chains in PDB entry 8Y83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 249
B
 MET 1VAL 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8Y83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
116 133Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
153 174Right-handed alpha
Helix 9
AA9
A
175 177Right-handed 310
Helix 10
AB1
A
192 197Right-handed 310
Helix 11
AB2
A
198 208Right-handed alpha
Helix 12
AB3
A
216 229Right-handed alpha
Helix 13
AB4
A
230 233Right-handed 310
Helix 14
AB5
A
245 249Right-handed 310
Helix 15
AB6
B
16 29Right-handed alpha
Helix 16
AB7
B
39 53Right-handed alpha
Helix 17
AB8
B
66 82Right-handed alpha
Helix 18
AB9
B
99 103Right-handed 310
Helix 19
AC1
B
104 116Right-handed alpha
Helix 20
AC2
B
116 134Right-handed alpha
Helix 21
AC3
B
143 147Right-handed 310
Helix 22
AC4
B
153 174Right-handed alpha
Helix 23
AC5
B
175 177Right-handed 310
Helix 24
AC6
B
199 208Right-handed alpha
Helix 25
AC7
B
216 229Right-handed alpha
Helix 26
AC8
B
230 233Right-handed 310
Helix 27
AC9
B
245 249Right-handed 310
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There are 2 sheets in PDB entry 8Y83. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
32 37parallel
Strand 3
A
8 12parallel
Strand 4
A
86 89parallel
Strand 5
A
136 141parallel
Strand 6
A
179 186parallel
Strand 7
A
239 242parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
32 37parallel
Strand 3
B
8 12parallel
Strand 4
B
86 89parallel
Strand 5
B
136 141parallel
Strand 6
B
179 186parallel
Strand 7
B
239 242parallel
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