Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y86


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y86 entry

There are 2 chains in PDB entry 8Y86 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 673SER 1210
B
 ASP 673SER 1210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8Y86. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
682 693Right-handed alpha
Helix 2
AA2
A
695 702Right-handed alpha
Helix 3
AA3
A
705 734Right-handed alpha
Helix 4
AA4
A
739 758Right-handed alpha
Helix 5
AA5
A
768 785Right-handed alpha
Helix 6
AA6
A
788 810Right-handed alpha
Helix 7
AA7
A
811 819Right-handed 310
Helix 8
AA8
A
820 850Right-handed alpha
Helix 9
AA9
A
892 913Right-handed alpha
Helix 10
AB1
A
914 916Right-handed 310
Helix 11
AB2
A
920 930Right-handed alpha
Helix 12
AB3
A
930 946Right-handed alpha
Helix 13
AB4
A
982 989Right-handed alpha
Helix 14
AB5
A
989 1012Right-handed alpha
Helix 15
AB6
A
1013 1017Right-handed 310
Helix 16
AB7
A
1025 1039Right-handed alpha
Helix 17
AB8
A
1040 1042Right-handed 310
Helix 18
AB9
A
1049 1060Right-handed alpha
Helix 19
AC1
A
1082 1095Right-handed alpha
Helix 20
AC2
A
1098 1103Right-handed alpha
Helix 21
AC3
A
1106 1122Right-handed alpha
Helix 22
AC4
A
1125 1133Right-handed alpha
Helix 23
AC5
A
1144 1149Right-handed alpha
Helix 24
AC6
A
1151 1175Right-handed alpha
Helix 25
AC7
A
1177 1179Right-handed 310
Helix 26
AC8
A
1180 1187Right-handed alpha
Helix 27
AC9
A
1187 1195Right-handed alpha
Helix 28
AD1
A
1195 1200Right-handed alpha
Helix 29
AD2
A
1201 1209Right-handed alpha
Helix 30
AD3
B
682 693Right-handed alpha
Helix 31
AD4
B
695 702Right-handed alpha
Helix 32
AD5
B
705 734Right-handed alpha
Helix 33
AD6
B
739 758Right-handed alpha
Helix 34
AD7
B
768 785Right-handed alpha
Helix 35
AD8
B
788 810Right-handed alpha
Helix 36
AD9
B
811 819Right-handed 310
Helix 37
AE1
B
820 850Right-handed alpha
Helix 38
AE2
B
892 913Right-handed alpha
Helix 39
AE3
B
914 916Right-handed 310
Helix 40
AE4
B
920 930Right-handed alpha
Helix 41
AE5
B
930 946Right-handed alpha
Helix 42
AE6
B
982 989Right-handed alpha
Helix 43
AE7
B
989 1012Right-handed alpha
Helix 44
AE8
B
1013 1017Right-handed 310
Helix 45
AE9
B
1025 1039Right-handed alpha
Helix 46
AF1
B
1040 1042Right-handed 310
Helix 47
AF2
B
1049 1060Right-handed alpha
Helix 48
AF3
B
1082 1095Right-handed alpha
Helix 49
AF4
B
1098 1103Right-handed alpha
Helix 50
AF5
B
1106 1122Right-handed alpha
Helix 51
AF6
B
1125 1133Right-handed alpha
Helix 52
AF7
B
1144 1149Right-handed alpha
Helix 53
AF8
B
1151 1175Right-handed alpha
Helix 54
AF9
B
1177 1179Right-handed 310
Helix 55
AG1
B
1180 1187Right-handed alpha
Helix 56
AG2
B
1187 1195Right-handed alpha
Helix 57
AG3
B
1195 1200Right-handed alpha
Helix 58
AG4
B
1201 1209Right-handed alpha
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There are 4 sheets in PDB entry 8Y86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
1047 1048anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1061 1063first strand
Strand 2
A
1075 1078anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 766first strand
Strand 2
B
1047 1048anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1061 1063first strand
Strand 2
B
1075 1078anti-parallel
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