Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y8B entry

There are 4 chains in PDB entry 8Y8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 14SER 284
B
 ALA 315ILE 669
C
 VAL 149LEU 248
T
 ILE 256GLY 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8Y8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
88 91Right-handed 310
Helix 2
AA2
B
328 334Right-handed alpha
Helix 3
AA3
B
355 363Right-handed alpha
Helix 4
AA4
B
397 402Right-handed 310
Helix 5
AA5
B
407 413Right-handed alpha
Helix 6
AA6
B
442 448Right-handed alpha
Helix 7
AA7
B
478 483Right-handed alpha
Helix 8
AA8
B
568 570Right-handed 310
Helix 9
AA9
C
181 187Right-handed alpha
Helix 10
AB1
T
299 303Right-handed 310
Helix 11
AB2
T
304 307Right-handed 310
Helix 12
AB3
T
406 411Right-handed alpha
Helix 13
AB4
T
476 492Right-handed alpha
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There are 19 sheets in PDB entry 8Y8B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
85 86parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
73 76anti-parallel
Strand 3
A
256 260anti-parallel
Strand 4
A
101 107anti-parallel
Strand 5
A
197 205anti-parallel
Strand 6
A
208 214anti-parallel
Strand 7
A
221 227anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
B
647 649parallel
Strand 3
B
655 659anti-parallel
Strand 4
B
666 668anti-parallel
Strand 5
B
635 636anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
262 270anti-parallel
Strand 3
A
276 281anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
240 241parallel
Strand 3
A
155 162parallel
Strand 4
A
173 175anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
234 237anti-parallel
Strand 3
A
124 127anti-parallel
Strand 4
A
136 142anti-parallel
Strand 5
A
145 151anti-parallel
Strand 6
A
183 190anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
117 120anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
316 319first strand
Strand 2
B
621 624parallel
Strand 3
B
627 630anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
435 437parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
383 392anti-parallel
Strand 3
B
585 597anti-parallel
Strand 4
B
422 430anti-parallel
Strand 5
B
364 371anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 349first strand
Strand 2
B
383 392anti-parallel
Strand 3
B
585 597anti-parallel
Strand 4
B
581 582anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 463first strand
Strand 2
B
575 579anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 468first strand
Strand 2
B
536 537anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 507first strand
Strand 2
B
515 518anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
550 551first strand
Strand 2
B
572 573anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 151first strand
Strand 2
C
158 159anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
196 197first strand
Strand 2
C
239 240anti-parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
260 261first strand
Strand 2
T
398 405anti-parallel
Strand 3
T
424 427anti-parallel
Strand 4
T
472 475anti-parallel
Strand 5
T
452 462anti-parallel
Strand 6
T
442 449anti-parallel
Strand 7
T
378 383anti-parallel
Strand 8
T
398 405anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
278 281first strand
Strand 2
T
272 275anti-parallel
Strand 3
T
309 311anti-parallel
Strand 4
T
326 333anti-parallel
Strand 5
T
347 351anti-parallel
Strand 6
T
290 293anti-parallel
Strand 7
T
284 287anti-parallel
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