Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y8E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y8E entry

There are 3 chains in PDB entry 8Y8E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 14	ASN 1221
B	VAL 14	ASN 1221
A	VAL 14	ASN 1221

There are 83 helices in PDB entry 8Y8E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	88	91	Right-handed 310
Helix 2	AA2	C	285	295	Right-handed alpha
Helix 3	AA3	C	328	334	Right-handed alpha
Helix 4	AA4	C	355	363	Right-handed alpha
Helix 5	AA5	C	397	402	Right-handed 310
Helix 6	AA6	C	408	413	Right-handed alpha
Helix 7	AA7	C	442	448	Right-handed alpha
Helix 8	AA8	C	478	483	Right-handed alpha
Helix 9	AA9	C	568	570	Right-handed 310
Helix 10	AB1	C	605	610	Right-handed alpha
Helix 11	AB2	C	611	613	Right-handed 310
Helix 12	AB3	C	699	704	Right-handed alpha
Helix 13	AB4	C	814	819	Right-handed alpha
Helix 14	AB5	C	822	830	Right-handed alpha
Helix 15	AB6	C	831	833	Right-handed 310
Helix 16	AB7	C	836	858	Right-handed alpha
Helix 17	AB8	C	878	882	Right-handed 310
Helix 18	AB9	C	901	909	Right-handed alpha
Helix 19	AC1	C	914	924	Right-handed alpha
Helix 20	AC2	C	933	940	Right-handed alpha
Helix 21	AC3	C	951	968	Right-handed alpha
Helix 22	AC4	C	978	987	Right-handed alpha
Helix 23	AC5	C	995	1000	Right-handed alpha
Helix 24	AC6	C	1002	1008	Right-handed alpha
Helix 25	AC7	C	1009	1018	Right-handed alpha
Helix 26	AC8	C	1028	1045	Right-handed alpha
Helix 27	AC9	C	1046	1049	Right-handed 310
Helix 28	AD1	C	1057	1065	Right-handed alpha
Helix 29	AD2	C	1070	1111	Right-handed alpha
Helix 30	AD3	C	1179	1183	Right-handed 310
Helix 31	AD4	B	86	91	Right-handed 310
Helix 32	AD5	B	285	295	Right-handed alpha
Helix 33	AD6	B	328	334	Right-handed alpha
Helix 34	AD7	B	355	363	Right-handed alpha
Helix 35	AD8	B	375	379	Right-handed 310
Helix 36	AD9	B	397	401	Right-handed 310
Helix 37	AE1	B	445	449	Right-handed 310
Helix 38	AE2	B	478	483	Right-handed alpha
Helix 39	AE3	B	568	570	Right-handed 310
Helix 40	AE4	B	605	608	Right-handed 310
Helix 41	AE5	B	696	700	Right-handed 310
Helix 42	AE6	B	813	818	Right-handed alpha
Helix 43	AE7	B	822	830	Right-handed alpha
Helix 44	AE8	B	834	862	Right-handed alpha
Helix 45	AE9	B	878	882	Right-handed 310
Helix 46	AF1	B	901	909	Right-handed alpha
Helix 47	AF2	B	914	925	Right-handed alpha
Helix 48	AF3	B	959	964	Right-handed alpha
Helix 49	AF4	B	965	968	Right-handed 310
Helix 50	AF5	B	978	987	Right-handed alpha
Helix 51	AF6	B	988	990	Right-handed 310
Helix 52	AF7	B	993	1000	Right-handed alpha
Helix 53	AF8	B	1000	1018	Right-handed alpha
Helix 54	AF9	B	1019	1021	Right-handed 310
Helix 55	AG1	B	1023	1046	Right-handed alpha
Helix 56	AG2	B	1047	1049	Right-handed 310
Helix 57	AG3	B	1057	1062	Right-handed alpha
Helix 58	AG4	B	1066	1113	Right-handed alpha
Helix 59	AG5	A	285	290	Right-handed alpha
Helix 60	AG6	A	328	334	Right-handed alpha
Helix 61	AG7	A	340	344	Right-handed 310
Helix 62	AG8	A	355	362	Right-handed alpha
Helix 63	AG9	A	394	401	Right-handed 310
Helix 64	AH1	A	407	413	Right-handed alpha
Helix 65	AH2	A	445	449	Right-handed 310
Helix 66	AH3	A	478	482	Right-handed 310
Helix 67	AH4	A	696	701	Right-handed alpha
Helix 68	AH5	A	813	818	Right-handed alpha
Helix 69	AH6	A	822	830	Right-handed alpha
Helix 70	AH7	A	836	860	Right-handed alpha
Helix 71	AH8	A	878	882	Right-handed 310
Helix 72	AH9	A	901	909	Right-handed alpha
Helix 73	AI1	A	914	924	Right-handed alpha
Helix 74	AI2	A	933	940	Right-handed alpha
Helix 75	AI3	A	951	965	Right-handed alpha
Helix 76	AI4	A	978	983	Right-handed alpha
Helix 77	AI5	A	1001	1018	Right-handed alpha
Helix 78	AI6	A	1019	1021	Right-handed 310
Helix 79	AI7	A	1023	1045	Right-handed alpha
Helix 80	AI8	A	1046	1049	Right-handed 310
Helix 81	AI9	A	1057	1062	Right-handed alpha
Helix 82	AJ1	A	1066	1113	Right-handed alpha
Helix 83	AJ2	A	1198	1202	Right-handed 310

There are 63 sheets in PDB entry 8Y8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	26	first strand
Strand 2	C	85	86	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	35	first strand
Strand 2	C	75	76	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	C	219	220	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	B	647	649	parallel
Strand 3	B	655	658	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	208	209	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	117	118	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	136	139	anti-parallel
Strand 3	C	148	151	anti-parallel
Strand 4	C	183	186	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	279	280	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	307	first strand
Strand 2	C	676	678	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	435	437	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	382	392	anti-parallel
Strand 3	C	585	597	anti-parallel
Strand 4	C	422	430	anti-parallel
Strand 5	C	365	370	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	382	392	anti-parallel
Strand 3	C	602	603	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	459	462	first strand
Strand 2	C	576	579	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	536	537	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	504	506	first strand
Strand 2	C	516	518	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	551	first strand
Strand 2	C	572	573	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	632	636	first strand
Strand 2	C	666	670	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	691	692	first strand
Strand 2	C	719	720	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	742	746	first strand
Strand 2	C	762	766	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	802	804	first strand
Strand 2	C	1140	1145	anti-parallel
Strand 3	C	1132	1137	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	809	811	first strand
Strand 2	C	944	946	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1162	1163	first strand
Strand 2	C	1213	1214	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1177	1178	first strand
Strand 2	C	1185	1186	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	266	270	anti-parallel
Strand 3	B	276	281	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	262	263	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	256	260	anti-parallel
Strand 3	B	102	107	anti-parallel
Strand 4	B	197	202	anti-parallel
Strand 5	B	211	213	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	112	first strand
Strand 2	B	117	119	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	145	147	anti-parallel
Strand 3	B	136	142	anti-parallel
Strand 4	B	123	127	anti-parallel
Strand 5	B	234	238	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	162	first strand
Strand 2	B	240	241	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	679	681	anti-parallel
Strand 3	B	689	690	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	339	first strand
Strand 2	B	435	437	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	382	392	anti-parallel
Strand 3	B	585	597	anti-parallel
Strand 4	B	581	582	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	371	first strand
Strand 2	B	422	430	anti-parallel
Strand 3	B	585	597	anti-parallel
Strand 4	B	382	392	anti-parallel
Strand 5	B	602	603	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	463	first strand
Strand 2	B	575	579	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	468	first strand
Strand 2	B	536	538	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	506	first strand
Strand 2	B	516	518	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	551	first strand
Strand 2	B	572	573	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	620	624	first strand
Strand 2	B	627	633	anti-parallel
Strand 3	B	669	671	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	713	715	first strand
Strand 2	B	718	720	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	746	first strand
Strand 2	B	762	766	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	791	first strand
Strand 2	B	1153	1154	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	804	first strand
Strand 2	B	1140	1143	anti-parallel
Strand 3	B	1135	1137	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1163	1164	first strand
Strand 2	B	1168	1172	anti-parallel
Strand 3	B	1202	1205	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1176	1177	first strand
Strand 2	B	1186	1187	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	85	86	parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	68	first strand
Strand 2	A	256	270	anti-parallel
Strand 3	A	101	106	anti-parallel
Strand 4	A	198	204	anti-parallel
Strand 5	A	208	214	anti-parallel
Strand 6	A	221	227	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	256	270	anti-parallel
Strand 3	A	276	281	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	126	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	145	151	anti-parallel
Strand 4	A	185	190	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	678	681	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	310	first strand
Strand 2	A	674	675	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	620	622	parallel
Strand 3	A	630	634	anti-parallel
Strand 4	A	666	670	anti-parallel
Strand 5	A	657	659	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	435	436	parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	386	392	anti-parallel
Strand 3	A	585	593	anti-parallel
Strand 4	A	422	430	anti-parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	383	first strand
Strand 2	A	602	603	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	462	first strand
Strand 2	A	576	578	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	537	538	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	551	first strand
Strand 2	A	572	573	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	788	first strand
Strand 2	A	1156	1157	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	797	804	first strand
Strand 2	A	1140	1147	anti-parallel
Strand 3	A	1133	1137	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	812	first strand
Strand 2	A	943	946	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1162	1163	first strand
Strand 2	A	1213	1214	parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1170	1171	first strand
Strand 2	A	1203	1204	anti-parallel

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There are 2 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1179	first strand
Strand 2	A	1184	1188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y8E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y8E