Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y8M entry

There is 1 chain in PDB entry 8Y8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2MET 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 8Y8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 16Right-handed alpha
Helix 2
AA2
A
29 39Right-handed alpha
Helix 3
AA3
A
48 64Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
80 91Right-handed alpha
Helix 6
AA6
A
102 106Right-handed 310
Helix 7
AA7
A
116 122Right-handed alpha
Helix 8
AA8
A
123 125Right-handed 310
Helix 9
AA9
A
133 135Right-handed 310
Helix 10
AB1
A
136 149Right-handed alpha
Helix 11
AB2
A
162 166Right-handed alpha
Helix 12
AB3
A
170 175Right-handed alpha
Helix 13
AB4
A
190 204Right-handed alpha
Helix 14
AB5
A
212 218Right-handed alpha
Helix 15
AB6
A
220 232Right-handed alpha
Helix 16
AB7
A
241 246Right-handed alpha
Helix 17
AB8
A
256 259Right-handed 310
Helix 18
AB9
A
262 266Right-handed 310
Helix 19
AC1
A
278 282Right-handed 310
Helix 20
AC2
A
301 305Right-handed 310
Helix 21
AC3
A
318 332Right-handed alpha
Helix 22
AC4
A
340 361Right-handed alpha
Helix 23
AC5
A
369 379Right-handed alpha
Helix 24
AC6
A
392 399Right-handed alpha
Helix 25
AC7
A
400 405Right-handed 310
Helix 26
AC8
A
421 432Right-handed alpha
Helix 27
AC9
A
444 448Right-handed alpha
Helix 28
AD1
A
449 451Right-handed 310
Helix 29
AD2
A
452 461Right-handed alpha
Helix 30
AD3
A
474 486Right-handed alpha
Helix 31
AD4
A
487 490Right-handed 310
Helix 32
AD5
A
499 507Right-handed alpha
Helix 33
AD6
A
516 518Right-handed 310
Helix 34
AD7
A
519 531Right-handed alpha
Helix 35
AD8
A
546 553Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8Y8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
168 169anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
20 23parallel
Strand 3
A
67 71parallel
Strand 4
A
94 100parallel
Strand 5
A
156 161parallel
Strand 6
A
127 130parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
235 237parallel
Strand 3
A
207 211parallel
Strand 4
A
269 273parallel
Strand 5
A
294 299parallel
Strand 6
A
313 316parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 411first strand
Strand 2
A
385 389parallel
Strand 3
A
438 443parallel
Strand 4
A
465 470parallel
Strand 5
A
534 539parallel
Strand 6
A
510 514parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il