Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y8S entry

There are 4 chains in PDB entry 8Y8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 15GLU 270
B
 ARG 20GLU 270
C
 TYR 19GLU 270
D
 TYR 19GLU 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8Y8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 49Right-handed alpha
Helix 2
AA2
A
55 79Right-handed alpha
Helix 3
AA3
A
83 93Right-handed alpha
Helix 4
AA4
A
99 123Right-handed alpha
Helix 5
AA5
A
123 131Right-handed alpha
Helix 6
AA6
A
143 147Right-handed 310
Helix 7
AA7
A
156 180Right-handed alpha
Helix 8
AA8
A
190 206Right-handed alpha
Helix 9
AA9
A
215 229Right-handed alpha
Helix 10
AB1
A
232 236Right-handed 310
Helix 11
AB2
A
241 243Right-handed 310
Helix 12
AB3
A
244 265Right-handed alpha
Helix 13
AB4
B
21 49Right-handed alpha
Helix 14
AB5
B
55 79Right-handed alpha
Helix 15
AB6
B
83 93Right-handed alpha
Helix 16
AB7
B
99 123Right-handed alpha
Helix 17
AB8
B
123 129Right-handed alpha
Helix 18
AB9
B
130 132Right-handed 310
Helix 19
AC1
B
143 147Right-handed 310
Helix 20
AC2
B
156 179Right-handed alpha
Helix 21
AC3
B
189 206Right-handed alpha
Helix 22
AC4
B
215 230Right-handed alpha
Helix 23
AC5
B
232 236Right-handed 310
Helix 24
AC6
B
244 265Right-handed alpha
Helix 25
AC7
C
20 49Right-handed alpha
Helix 26
AC8
C
56 79Right-handed alpha
Helix 27
AC9
C
83 93Right-handed alpha
Helix 28
AD1
C
99 123Right-handed alpha
Helix 29
AD2
C
123 129Right-handed alpha
Helix 30
AD3
C
143 147Right-handed 310
Helix 31
AD4
C
156 180Right-handed alpha
Helix 32
AD5
C
189 206Right-handed alpha
Helix 33
AD6
C
215 230Right-handed alpha
Helix 34
AD7
C
232 236Right-handed 310
Helix 35
AD8
C
241 243Right-handed 310
Helix 36
AD9
C
244 265Right-handed alpha
Helix 37
AE1
C
266 269Right-handed 310
Helix 38
AE2
D
20 49Right-handed alpha
Helix 39
AE3
D
55 79Right-handed alpha
Helix 40
AE4
D
83 93Right-handed alpha
Helix 41
AE5
D
99 123Right-handed alpha
Helix 42
AE6
D
123 129Right-handed alpha
Helix 43
AE7
D
130 132Right-handed 310
Helix 44
AE8
D
143 147Right-handed 310
Helix 45
AE9
D
156 179Right-handed alpha
Helix 46
AF1
D
190 206Right-handed alpha
Helix 47
AF2
D
215 230Right-handed alpha
Helix 48
AF3
D
233 238Right-handed alpha
Helix 49
AF4
D
244 265Right-handed alpha
Helix 50
AF5
D
266 269Right-handed 310
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There are no sheets in PDB entry 8Y8S
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