Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y8Y entry

There is 1 chain in PDB entry 8Y8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 24TYR 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8Y8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
83 92Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
113 130Right-handed alpha
Helix 5
AA5
A
136 153Right-handed alpha
Helix 6
AA6
A
154 158Right-handed 310
Helix 7
AA7
A
161 167Right-handed 310
Helix 8
AA8
A
172 176Right-handed 310
Helix 9
AA9
A
177 195Right-handed alpha
Helix 10
AB1
A
199 213Right-handed alpha
Helix 11
AB2
A
286 304Right-handed alpha
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There are 2 sheets in PDB entry 8Y8Y. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
25 28anti-parallel
Strand 3
A
96 101parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
75 77anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
240 245anti-parallel
Strand 3
A
231 236anti-parallel
Strand 4
A
220 226anti-parallel
Strand 5
A
279 283anti-parallel
Strand 6
A
268 273anti-parallel
Strand 7
A
259 265anti-parallel
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