Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y93 entry

There are 2 chains in PDB entry 8Y93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 53ILE 617
E
 ALA 53ILE 617
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8Y93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 74Right-handed alpha
Helix 2
AA2
A
75 79Right-handed 310
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
90 93Right-handed 310
Helix 5
AA5
A
94 104Right-handed alpha
Helix 6
AA6
A
106 120Right-handed alpha
Helix 7
AA7
A
131 133Right-handed 310
Helix 8
AA8
A
134 165Right-handed alpha
Helix 9
AA9
A
208 217Right-handed alpha
Helix 10
AB1
A
234 253Right-handed alpha
Helix 11
AB2
A
255 267Right-handed alpha
Helix 12
AB3
A
268 282Right-handed alpha
Helix 13
AB4
A
286 295Right-handed alpha
Helix 14
AB5
A
309 320Right-handed alpha
Helix 15
AB6
A
324 330Right-handed alpha
Helix 16
AB7
A
338 372Right-handed alpha
Helix 17
AB8
A
383 388Right-handed alpha
Helix 18
AB9
A
390 397Right-handed alpha
Helix 19
AC1
A
400 435Right-handed alpha
Helix 20
AC2
A
436 441Right-handed alpha
Helix 21
AC3
A
441 457Right-handed alpha
Helix 22
AC4
A
464 494Right-handed alpha
Helix 23
AC5
A
497 510Right-handed alpha
Helix 24
AC6
A
514 523Right-handed alpha
Helix 25
AC7
A
523 539Right-handed alpha
Helix 26
AC8
A
551 567Right-handed alpha
Helix 27
AC9
A
567 580Right-handed alpha
Helix 28
AD1
A
583 589Right-handed alpha
Helix 29
AD2
A
597 603Right-handed alpha
Helix 30
AD3
A
606 609Right-handed 310
Helix 31
AD4
A
610 615Right-handed alpha
Helix 32
AD5
E
61 74Right-handed alpha
Helix 33
AD6
E
95 105Right-handed alpha
Helix 34
AD7
E
105 121Right-handed alpha
Helix 35
AD8
E
131 134Right-handed 310
Helix 36
AD9
E
135 166Right-handed alpha
Helix 37
AE1
E
208 215Right-handed alpha
Helix 38
AE2
E
234 253Right-handed alpha
Helix 39
AE3
E
255 267Right-handed alpha
Helix 40
AE4
E
269 284Right-handed alpha
Helix 41
AE5
E
287 295Right-handed alpha
Helix 42
AE6
E
308 320Right-handed alpha
Helix 43
AE7
E
324 333Right-handed alpha
Helix 44
AE8
E
338 372Right-handed alpha
Helix 45
AE9
E
385 398Right-handed alpha
Helix 46
AF1
E
400 435Right-handed alpha
Helix 47
AF2
E
435 441Right-handed alpha
Helix 48
AF3
E
441 457Right-handed alpha
Helix 49
AF4
E
464 494Right-handed alpha
Helix 50
AF5
E
497 509Right-handed alpha
Helix 51
AF6
E
514 523Right-handed alpha
Helix 52
AF7
E
523 539Right-handed alpha
Helix 53
AF8
E
551 567Right-handed alpha
Helix 54
AF9
E
567 580Right-handed alpha
Helix 55
AG1
E
583 593Right-handed alpha
Helix 56
AG2
E
598 603Right-handed alpha
Helix 57
AG3
E
610 616Right-handed alpha
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There are no sheets in PDB entry 8Y93
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il