Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y96 entry

There are 4 chains in PDB entry 8Y96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 428
C
 GLU 11ASN 210
B
 MET 1VAL 427
D
 GLU 11ASN 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8Y96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed 310
Helix 2
AA2
A
22 26Right-handed 310
Helix 3
AA3
A
32 36Right-handed 310
Helix 4
AA4
A
44 55Right-handed alpha
Helix 5
AA5
A
58 75Right-handed alpha
Helix 6
AA6
A
84 96Right-handed alpha
Helix 7
AA7
A
111 121Right-handed alpha
Helix 8
AA8
A
142 146Right-handed 310
Helix 9
AA9
A
157 161Right-handed 310
Helix 10
AB1
A
164 175Right-handed alpha
Helix 11
AB2
A
226 241Right-handed alpha
Helix 12
AB3
A
247 260Right-handed alpha
Helix 13
AB4
A
260 281Right-handed alpha
Helix 14
AB5
A
309 313Right-handed 310
Helix 15
AB6
A
316 332Right-handed alpha
Helix 16
AB7
A
342 346Right-handed 310
Helix 17
AB8
A
347 352Right-handed alpha
Helix 18
AB9
A
358 363Right-handed alpha
Helix 19
AC1
A
370 373Right-handed 310
Helix 20
AC2
A
374 383Right-handed alpha
Helix 21
AC3
A
388 393Right-handed alpha
Helix 22
AC4
A
396 412Right-handed alpha
Helix 23
AC5
A
413 424Right-handed alpha
Helix 24
AC6
C
12 27Right-handed alpha
Helix 25
AC7
C
37 51Right-handed alpha
Helix 26
AC8
C
60 72Right-handed alpha
Helix 27
AC9
C
86 97Right-handed alpha
Helix 28
AD1
C
121 126Right-handed alpha
Helix 29
AD2
C
137 140Right-handed 310
Helix 30
AD3
C
151 162Right-handed alpha
Helix 31
AD4
C
193 207Right-handed alpha
Helix 32
AD5
B
14 20Right-handed 310
Helix 33
AD6
B
22 26Right-handed 310
Helix 34
AD7
B
32 37Right-handed 310
Helix 35
AD8
B
44 55Right-handed alpha
Helix 36
AD9
B
58 75Right-handed alpha
Helix 37
AE1
B
84 97Right-handed alpha
Helix 38
AE2
B
111 121Right-handed alpha
Helix 39
AE3
B
141 146Right-handed 310
Helix 40
AE4
B
157 161Right-handed 310
Helix 41
AE5
B
164 175Right-handed alpha
Helix 42
AE6
B
226 241Right-handed alpha
Helix 43
AE7
B
247 280Right-handed alpha
Helix 44
AE8
B
309 313Right-handed 310
Helix 45
AE9
B
316 332Right-handed alpha
Helix 46
AF1
B
342 346Right-handed 310
Helix 47
AF2
B
347 352Right-handed alpha
Helix 48
AF3
B
359 364Right-handed 310
Helix 49
AF4
B
370 373Right-handed 310
Helix 50
AF5
B
374 383Right-handed alpha
Helix 51
AF6
B
388 393Right-handed alpha
Helix 52
AF7
B
396 412Right-handed alpha
Helix 53
AF8
B
413 423Right-handed alpha
Helix 54
AF9
D
12 27Right-handed alpha
Helix 55
AG1
D
37 51Right-handed alpha
Helix 56
AG2
D
60 70Right-handed alpha
Helix 57
AG3
D
71 73Right-handed 310
Helix 58
AG4
D
86 97Right-handed alpha
Helix 59
AG5
D
120 126Right-handed alpha
Helix 60
AG6
D
137 140Right-handed 310
Helix 61
AG7
D
151 161Right-handed alpha
Helix 62
AG8
D
193 207Right-handed alpha
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There are 10 sheets in PDB entry 8Y96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
178 182parallel
Strand 5
A
150 153parallel
Strand 6
A
103 107parallel
Strand 7
A
124 128parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
194 195anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
301 305anti-parallel
Strand 3
A
384 387anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 58first strand
Strand 2
C
145 149anti-parallel
Strand 3
C
131 135anti-parallel
Strand 4
C
109 112parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 80first strand
Strand 2
C
99 100parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 82first strand
Strand 2
B
220 224anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
178 182parallel
Strand 5
B
150 153parallel
Strand 6
B
103 107parallel
Strand 7
B
124 128parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 195first strand
Strand 2
B
190 191anti-parallel
Strand 3
B
294 295anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 286first strand
Strand 2
B
301 305anti-parallel
Strand 3
B
384 387anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 58first strand
Strand 2
D
145 149anti-parallel
Strand 3
D
132 135anti-parallel
Strand 4
D
109 112parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 80first strand
Strand 2
D
99 100parallel
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