Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9E entry

There are 4 chains in PDB entry 8Y9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 23GLU 432
B
 SER 23GLU 432
C
 SER 23GLU 432
D
 SER 23GLU 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8Y9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 34Right-handed alpha
Helix 2
AA2
A
38 60Right-handed alpha
Helix 3
AA3
A
62 76Right-handed alpha
Helix 4
AA4
A
77 81Right-handed 310
Helix 5
AA5
A
137 151Right-handed alpha
Helix 6
AA6
A
159 168Right-handed alpha
Helix 7
AA7
A
170 177Right-handed alpha
Helix 8
AA8
A
210 218Right-handed alpha
Helix 9
AA9
A
220 237Right-handed alpha
Helix 10
AB1
A
242 250Right-handed alpha
Helix 11
AB2
A
251 257Right-handed alpha
Helix 12
AB3
A
287 297Right-handed alpha
Helix 13
AB4
A
303 321Right-handed alpha
Helix 14
AB5
A
325 329Right-handed 310
Helix 15
AB6
A
361 377Right-handed alpha
Helix 16
AB7
A
378 393Right-handed alpha
Helix 17
AB8
A
394 399Right-handed alpha
Helix 18
AB9
A
426 430Right-handed 310
Helix 19
AC1
B
25 34Right-handed alpha
Helix 20
AC2
B
38 60Right-handed alpha
Helix 21
AC3
B
62 76Right-handed alpha
Helix 22
AC4
B
77 81Right-handed 310
Helix 23
AC5
B
137 151Right-handed alpha
Helix 24
AC6
B
159 168Right-handed alpha
Helix 25
AC7
B
170 177Right-handed alpha
Helix 26
AC8
B
210 218Right-handed alpha
Helix 27
AC9
B
220 237Right-handed alpha
Helix 28
AD1
B
242 250Right-handed alpha
Helix 29
AD2
B
251 257Right-handed alpha
Helix 30
AD3
B
287 297Right-handed alpha
Helix 31
AD4
B
303 321Right-handed alpha
Helix 32
AD5
B
325 329Right-handed 310
Helix 33
AD6
B
361 377Right-handed alpha
Helix 34
AD7
B
378 393Right-handed alpha
Helix 35
AD8
B
394 399Right-handed alpha
Helix 36
AD9
B
426 430Right-handed 310
Helix 37
AE1
C
25 34Right-handed alpha
Helix 38
AE2
C
38 60Right-handed alpha
Helix 39
AE3
C
62 76Right-handed alpha
Helix 40
AE4
C
77 81Right-handed 310
Helix 41
AE5
C
137 151Right-handed alpha
Helix 42
AE6
C
159 168Right-handed alpha
Helix 43
AE7
C
170 177Right-handed alpha
Helix 44
AE8
C
210 218Right-handed alpha
Helix 45
AE9
C
220 237Right-handed alpha
Helix 46
AF1
C
242 250Right-handed alpha
Helix 47
AF2
C
251 257Right-handed alpha
Helix 48
AF3
C
287 297Right-handed alpha
Helix 49
AF4
C
303 321Right-handed alpha
Helix 50
AF5
C
325 329Right-handed 310
Helix 51
AF6
C
361 377Right-handed alpha
Helix 52
AF7
C
378 393Right-handed alpha
Helix 53
AF8
C
394 399Right-handed alpha
Helix 54
AF9
C
426 430Right-handed 310
Helix 55
AG1
D
25 34Right-handed alpha
Helix 56
AG2
D
38 60Right-handed alpha
Helix 57
AG3
D
62 76Right-handed alpha
Helix 58
AG4
D
77 81Right-handed 310
Helix 59
AG5
D
137 151Right-handed alpha
Helix 60
AG6
D
159 168Right-handed alpha
Helix 61
AG7
D
170 177Right-handed alpha
Helix 62
AG8
D
210 218Right-handed alpha
Helix 63
AG9
D
220 237Right-handed alpha
Helix 64
AH1
D
242 250Right-handed alpha
Helix 65
AH2
D
251 257Right-handed alpha
Helix 66
AH3
D
287 297Right-handed alpha
Helix 67
AH4
D
303 321Right-handed alpha
Helix 68
AH5
D
325 329Right-handed 310
Helix 69
AH6
D
361 377Right-handed alpha
Helix 70
AH7
D
378 393Right-handed alpha
Helix 71
AH8
D
394 399Right-handed alpha
Helix 72
AH9
D
426 430Right-handed 310
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There are 4 sheets in PDB entry 8Y9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
205 208anti-parallel
Strand 4
A
258 268anti-parallel
Strand 5
A
277 285anti-parallel
Strand 6
A
334 342anti-parallel
Strand 7
A
349 356anti-parallel
Strand 8
A
406 414anti-parallel
Strand 9
A
417 424anti-parallel
Strand 10
A
104 109anti-parallel
Strand 11
A
117 121anti-parallel
Strand 12
A
191 196anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
191 196anti-parallel
Strand 3
B
205 208anti-parallel
Strand 4
B
258 268anti-parallel
Strand 5
B
277 285anti-parallel
Strand 6
B
334 342anti-parallel
Strand 7
B
349 356anti-parallel
Strand 8
B
406 414anti-parallel
Strand 9
B
417 424anti-parallel
Strand 10
B
104 109anti-parallel
Strand 11
B
117 121anti-parallel
Strand 12
B
191 196anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
191 196anti-parallel
Strand 3
C
205 208anti-parallel
Strand 4
C
258 268anti-parallel
Strand 5
C
277 285anti-parallel
Strand 6
C
334 342anti-parallel
Strand 7
C
349 356anti-parallel
Strand 8
C
406 414anti-parallel
Strand 9
C
417 424anti-parallel
Strand 10
C
104 109anti-parallel
Strand 11
C
117 121anti-parallel
Strand 12
C
191 196anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
202 203first strand
Strand 2
D
191 196anti-parallel
Strand 3
D
205 208anti-parallel
Strand 4
D
258 268anti-parallel
Strand 5
D
277 285anti-parallel
Strand 6
D
334 342anti-parallel
Strand 7
D
349 356anti-parallel
Strand 8
D
406 414anti-parallel
Strand 9
D
417 424anti-parallel
Strand 10
D
104 109anti-parallel
Strand 11
D
117 121anti-parallel
Strand 12
D
191 196anti-parallel
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