Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8Y9F entry

There are 7 chains in PDB entry 8Y9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ASP 39
B	SER 41	SER 439
C	MET 1	PHE 190
D	MET 1	GLU 427
E	MET 1	SER 439
F	MET 1	GLU 427
I	SER 211	TRP 263

There are 92 helices in PDB entry 8Y9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	28	Right-handed alpha
Helix 2	AA2	B	39	51	Right-handed 310
Helix 3	AA3	B	72	81	Right-handed alpha
Helix 4	AA4	B	88	90	Right-handed 310
Helix 5	AA5	B	102	108	Right-handed alpha
Helix 6	AA6	B	110	129	Right-handed alpha
Helix 7	AA7	B	144	162	Right-handed alpha
Helix 8	AA8	B	182	196	Right-handed alpha
Helix 9	AA9	B	206	216	Right-handed alpha
Helix 10	AB1	B	223	240	Right-handed alpha
Helix 11	AB2	B	241	243	Right-handed 310
Helix 12	AB3	B	251	260	Right-handed alpha
Helix 13	AB4	B	277	282	Right-handed alpha
Helix 14	AB5	B	287	297	Right-handed alpha
Helix 15	AB6	B	298	301	Right-handed 310
Helix 16	AB7	B	306	310	Right-handed 310
Helix 17	AB8	B	324	338	Right-handed alpha
Helix 18	AB9	B	384	401	Right-handed alpha
Helix 19	AC1	B	404	410	Right-handed alpha
Helix 20	AC2	B	414	437	Right-handed alpha
Helix 21	AC3	C	19	26	Right-handed alpha
Helix 22	AC4	C	31	50	Right-handed alpha
Helix 23	AC5	C	57	63	Right-handed alpha
Helix 24	AC6	C	100	102	Right-handed 310
Helix 25	AC7	C	119	122	Right-handed 310
Helix 26	AC8	C	125	139	Right-handed alpha
Helix 27	AC9	C	141	143	Right-handed 310
Helix 28	AD1	C	151	163	Right-handed alpha
Helix 29	AD2	D	10	29	Right-handed alpha
Helix 30	AD3	D	40	45	Right-handed alpha
Helix 31	AD4	D	46	50	Right-handed 310
Helix 32	AD5	D	69	79	Right-handed alpha
Helix 33	AD6	D	81	85	Right-handed 310
Helix 34	AD7	D	86	90	Right-handed 310
Helix 35	AD8	D	100	106	Right-handed alpha
Helix 36	AD9	D	107	126	Right-handed alpha
Helix 37	AE1	D	142	159	Right-handed alpha
Helix 38	AE2	D	180	196	Right-handed alpha
Helix 39	AE3	D	204	214	Right-handed alpha
Helix 40	AE4	D	221	236	Right-handed alpha
Helix 41	AE5	D	237	241	Right-handed 310
Helix 42	AE6	D	249	258	Right-handed alpha
Helix 43	AE7	D	285	294	Right-handed alpha
Helix 44	AE8	D	295	299	Right-handed 310
Helix 45	AE9	D	304	308	Right-handed 310
Helix 46	AF1	D	322	336	Right-handed alpha
Helix 47	AF2	D	337	341	Right-handed 310
Helix 48	AF3	D	373	391	Right-handed alpha
Helix 49	AF4	D	394	400	Right-handed alpha
Helix 50	AF5	D	404	427	Right-handed alpha
Helix 51	AF6	E	10	29	Right-handed alpha
Helix 52	AF7	E	47	51	Right-handed 310
Helix 53	AF8	E	72	80	Right-handed alpha
Helix 54	AF9	E	81	86	Right-handed 310
Helix 55	AG1	E	102	108	Right-handed alpha
Helix 56	AG2	E	111	129	Right-handed alpha
Helix 57	AG3	E	144	161	Right-handed alpha
Helix 58	AG4	E	182	198	Right-handed alpha
Helix 59	AG5	E	206	216	Right-handed alpha
Helix 60	AG6	E	225	240	Right-handed alpha
Helix 61	AG7	E	241	243	Right-handed 310
Helix 62	AG8	E	251	260	Right-handed alpha
Helix 63	AG9	E	277	282	Right-handed alpha
Helix 64	AH1	E	287	296	Right-handed alpha
Helix 65	AH2	E	297	301	Right-handed 310
Helix 66	AH3	E	324	337	Right-handed alpha
Helix 67	AH4	E	383	401	Right-handed alpha
Helix 68	AH5	E	404	411	Right-handed alpha
Helix 69	AH6	E	415	436	Right-handed alpha
Helix 70	AH7	F	10	29	Right-handed alpha
Helix 71	AH8	F	41	46	Right-handed alpha
Helix 72	AH9	F	47	49	Right-handed 310
Helix 73	AI1	F	69	79	Right-handed alpha
Helix 74	AI2	F	86	88	Right-handed 310
Helix 75	AI3	F	100	107	Right-handed alpha
Helix 76	AI4	F	107	126	Right-handed alpha
Helix 77	AI5	F	142	159	Right-handed alpha
Helix 78	AI6	F	172	176	Right-handed 310
Helix 79	AI7	F	180	196	Right-handed alpha
Helix 80	AI8	F	204	214	Right-handed alpha
Helix 81	AI9	F	221	237	Right-handed alpha
Helix 82	AJ1	F	249	258	Right-handed alpha
Helix 83	AJ2	F	285	294	Right-handed alpha
Helix 84	AJ3	F	304	308	Right-handed 310
Helix 85	AJ4	F	322	337	Right-handed alpha
Helix 86	AJ5	F	338	341	Right-handed 310
Helix 87	AJ6	F	373	391	Right-handed alpha
Helix 88	AJ7	F	394	400	Right-handed alpha
Helix 89	AJ8	F	404	425	Right-handed alpha
Helix 90	AJ9	I	220	224	Right-handed 310
Helix 91	AK1	I	225	232	Right-handed alpha
Helix 92	AK2	I	247	256	Right-handed alpha

There are 15 sheets in PDB entry 8Y9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	205	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	272	first strand
Strand 2	B	373	381	anti-parallel
Strand 3	B	312	321	anti-parallel
Strand 4	B	351	354	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	82	94	anti-parallel
Strand 3	C	68	76	anti-parallel
Strand 4	C	15	18	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	82	94	anti-parallel
Strand 3	C	108	117	anti-parallel
Strand 4	C	145	148	parallel
Strand 5	C	174	176	anti-parallel
Strand 6	C	168	169	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	103	104	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	3	9	parallel
Strand 4	D	130	138	parallel
Strand 5	D	163	170	parallel
Strand 6	D	202	203	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	3	9	parallel
Strand 4	D	130	138	parallel
Strand 5	D	163	170	parallel
Strand 6	D	198	200	parallel
Strand 7	D	265	266	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	270	first strand
Strand 2	D	364	371	anti-parallel
Strand 3	D	310	318	anti-parallel
Strand 4	D	349	353	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	65	69	parallel
Strand 3	E	3	9	parallel
Strand 4	E	132	140	parallel
Strand 5	E	165	172	parallel
Strand 6	E	200	201	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	65	69	parallel
Strand 3	E	3	9	parallel
Strand 4	E	132	140	parallel
Strand 5	E	165	172	parallel
Strand 6	E	204	205	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	351	356	first strand
Strand 2	E	312	321	parallel
Strand 3	E	373	381	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	63	67	parallel
Strand 3	F	3	9	parallel
Strand 4	F	130	138	parallel
Strand 5	F	163	170	parallel
Strand 6	F	198	203	parallel
Strand 7	F	265	270	parallel
Strand 8	F	364	371	anti-parallel
Strand 9	F	310	318	anti-parallel
Strand 10	F	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	53	first strand
Strand 2	F	59	61	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8Y9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9F