Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9J entry

There are 5 chains in PDB entry 8Y9J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 19ALA 408
B
 MET 19GLU 407
C
 LEU 10THR 231
D
 ASN 28THR 231
K
 U 7 U 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8Y9J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 29Right-handed alpha
Helix 2
AA2
A
48 64Right-handed alpha
Helix 3
AA3
A
68 84Right-handed alpha
Helix 4
AA4
A
85 91Right-handed alpha
Helix 5
AA5
A
93 102Right-handed alpha
Helix 6
AA6
A
116 121Right-handed alpha
Helix 7
AA7
A
124 137Right-handed alpha
Helix 8
AA8
A
145 157Right-handed alpha
Helix 9
AA9
A
163 183Right-handed alpha
Helix 10
AB1
A
188 221Right-handed alpha
Helix 11
AB2
A
226 240Right-handed alpha
Helix 12
AB3
A
244 254Right-handed alpha
Helix 13
AB4
A
266 269Right-handed 310
Helix 14
AB5
A
270 290Right-handed alpha
Helix 15
AB6
A
293 301Right-handed alpha
Helix 16
AB7
A
301 308Right-handed alpha
Helix 17
AB8
A
313 329Right-handed alpha
Helix 18
AB9
A
330 335Right-handed 310
Helix 19
AC1
A
337 366Right-handed alpha
Helix 20
AC2
A
369 408Right-handed alpha
Helix 21
AC3
B
21 28Right-handed alpha
Helix 22
AC4
B
48 64Right-handed alpha
Helix 23
AC5
B
66 83Right-handed alpha
Helix 24
AC6
B
85 93Right-handed alpha
Helix 25
AC7
B
93 102Right-handed alpha
Helix 26
AC8
B
115 121Right-handed alpha
Helix 27
AC9
B
124 137Right-handed alpha
Helix 28
AD1
B
145 157Right-handed alpha
Helix 29
AD2
B
160 183Right-handed alpha
Helix 30
AD3
B
188 221Right-handed alpha
Helix 31
AD4
B
225 240Right-handed alpha
Helix 32
AD5
B
244 253Right-handed alpha
Helix 33
AD6
B
270 291Right-handed alpha
Helix 34
AD7
B
292 297Right-handed 310
Helix 35
AD8
B
304 308Right-handed 310
Helix 36
AD9
B
313 329Right-handed alpha
Helix 37
AE1
B
330 335Right-handed 310
Helix 38
AE2
B
339 367Right-handed alpha
Helix 39
AE3
B
368 407Right-handed alpha
Helix 40
AE4
C
14 27Right-handed alpha
Helix 41
AE5
C
51 62Right-handed alpha
Helix 42
AE6
C
66 76Right-handed alpha
Helix 43
AE7
C
76 81Right-handed alpha
Helix 44
AE8
C
88 105Right-handed alpha
Helix 45
AE9
C
115 130Right-handed alpha
Helix 46
AF1
C
138 144Right-handed 310
Helix 47
AF2
C
145 166Right-handed alpha
Helix 48
AF3
C
204 210Right-handed 310
Helix 49
AF4
C
223 230Right-handed alpha
Helix 50
AF5
D
53 61Right-handed alpha
Helix 51
AF6
D
66 82Right-handed alpha
Helix 52
AF7
D
90 106Right-handed alpha
Helix 53
AF8
D
114 128Right-handed alpha
Helix 54
AF9
D
138 144Right-handed alpha
Helix 55
AG1
D
145 166Right-handed alpha
Helix 56
AG2
D
206 211Right-handed alpha
Helix 57
AG3
D
223 230Right-handed alpha
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There are 8 sheets in PDB entry 8Y9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
104 109parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
262 264anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
104 110parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 258first strand
Strand 2
B
261 264anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 34first strand
Strand 2
C
37 42anti-parallel
Strand 3
C
45 50anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
C
218 222parallel
Strand 3
C
197 202anti-parallel
Strand 4
C
186 191anti-parallel
Strand 5
C
179 183anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 33first strand
Strand 2
D
37 42anti-parallel
Strand 3
D
45 50anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
178 182first strand
Strand 2
D
187 193anti-parallel
Strand 3
D
196 202anti-parallel
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