Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9M entry

There are 4 chains in PDB entry 8Y9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 870
B
 G -35 G 20
C
 C -20 C 8
D
 G -8 T 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8Y9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 41Right-handed alpha
Helix 2
AA2
A
59 72Right-handed alpha
Helix 3
AA3
A
74 88Right-handed alpha
Helix 4
AA4
A
89 99Right-handed 310
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
126 130Right-handed 310
Helix 7
AA7
A
139 143Right-handed 310
Helix 8
AA8
A
144 154Right-handed alpha
Helix 9
AA9
A
156 165Right-handed alpha
Helix 10
AB1
A
170 173Right-handed 310
Helix 11
AB2
A
174 184Right-handed alpha
Helix 12
AB3
A
193 231Right-handed alpha
Helix 13
AB4
A
233 249Right-handed alpha
Helix 14
AB5
A
256 267Right-handed alpha
Helix 15
AB6
A
276 284Right-handed alpha
Helix 16
AB7
A
285 293Right-handed 310
Helix 17
AB8
A
294 312Right-handed alpha
Helix 18
AB9
A
432 441Right-handed alpha
Helix 19
AC1
A
448 453Right-handed alpha
Helix 20
AC2
A
508 511Right-handed 310
Helix 21
AC3
A
512 534Right-handed alpha
Helix 22
AC4
A
542 551Right-handed alpha
Helix 23
AC5
A
558 575Right-handed alpha
Helix 24
AC6
A
575 583Right-handed alpha
Helix 25
AC7
A
590 610Right-handed alpha
Helix 26
AC8
A
633 649Right-handed alpha
Helix 27
AC9
A
670 678Right-handed alpha
Helix 28
AD1
A
678 692Right-handed alpha
Helix 29
AD2
A
739 753Right-handed alpha
Helix 30
AD3
A
782 790Right-handed alpha
Helix 31
AD4
A
830 846Right-handed alpha
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There are 7 sheets in PDB entry 8Y9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
426 429anti-parallel
Strand 3
A
403 407anti-parallel
Strand 4
A
378 383anti-parallel
Strand 5
A
367 373anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
410 414anti-parallel
Strand 3
A
420 423anti-parallel
Strand 4
A
11 17anti-parallel
Strand 5
A
356 360anti-parallel
Strand 6
A
348 352anti-parallel
Strand 7
A
340 343anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
57 58anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 489first strand
Strand 2
A
493 499anti-parallel
Strand 3
A
475 480anti-parallel
Strand 4
A
461 463anti-parallel
Strand 5
A
654 658parallel
Strand 6
A
696 700parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
717 718first strand
Strand 2
A
725 730anti-parallel
Strand 3
A
733 738anti-parallel
Strand 4
A
852 853parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 762first strand
Strand 2
A
820 824anti-parallel
Strand 3
A
827 829anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 800first strand
Strand 2
A
804 808anti-parallel
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