Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9P entry

There is 1 chain in PDB entry 8Y9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -1PHE 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 8Y9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
30 37Right-handed alpha
Helix 3
AA3
A
40 49Right-handed alpha
Helix 4
AA4
A
54 59Right-handed alpha
Helix 5
AA5
A
69 72Right-handed 310
Helix 6
AA6
A
73 81Right-handed alpha
Helix 7
AA7
A
92 103Right-handed alpha
Helix 8
AA8
A
105 109Right-handed 310
Helix 9
AA9
A
129 133Right-handed 310
Helix 10
AB1
A
134 148Right-handed alpha
Helix 11
AB2
A
154 173Right-handed alpha
Helix 12
AB3
A
174 176Right-handed 310
Helix 13
AB4
A
182 185Right-handed 310
Helix 14
AB5
A
186 195Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8Y9P.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
64 65parallel
Strand 3
A
3 5parallel
Strand 4
A
85 89parallel
Strand 5
A
178 181parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il