Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9Q entry

There are 2 chains in PDB entry 8Y9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 448
B
 MET 1GLU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8Y9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
37 43Right-handed alpha
Helix 4
AA4
A
50 54Right-handed 310
Helix 5
AA5
A
56 71Right-handed alpha
Helix 6
AA6
A
81 86Right-handed alpha
Helix 7
AA7
A
95 100Right-handed 310
Helix 8
AA8
A
101 118Right-handed alpha
Helix 9
AA9
A
137 145Right-handed alpha
Helix 10
AB1
A
150 154Right-handed 310
Helix 11
AB2
A
156 172Right-handed alpha
Helix 12
AB3
A
183 194Right-handed alpha
Helix 13
AB4
A
195 198Right-handed 310
Helix 14
AB5
A
205 228Right-handed alpha
Helix 15
AB6
A
249 258Right-handed alpha
Helix 16
AB7
A
258 266Right-handed alpha
Helix 17
AB8
A
267 269Right-handed 310
Helix 18
AB9
A
306 310Right-handed 310
Helix 19
AC1
A
331 345Right-handed alpha
Helix 20
AC2
A
363 381Right-handed alpha
Helix 21
AC3
A
398 405Right-handed 310
Helix 22
AC4
A
422 435Right-handed alpha
Helix 23
AC5
A
437 448Right-handed 310
Helix 24
AC6
B
21 25Right-handed 310
Helix 25
AC7
B
29 37Right-handed alpha
Helix 26
AC8
B
37 43Right-handed alpha
Helix 27
AC9
B
50 54Right-handed 310
Helix 28
AD1
B
56 71Right-handed alpha
Helix 29
AD2
B
81 86Right-handed alpha
Helix 30
AD3
B
95 100Right-handed 310
Helix 31
AD4
B
101 118Right-handed alpha
Helix 32
AD5
B
137 145Right-handed alpha
Helix 33
AD6
B
150 154Right-handed 310
Helix 34
AD7
B
156 172Right-handed alpha
Helix 35
AD8
B
183 194Right-handed alpha
Helix 36
AD9
B
195 198Right-handed 310
Helix 37
AE1
B
205 231Right-handed alpha
Helix 38
AE2
B
249 258Right-handed alpha
Helix 39
AE3
B
258 264Right-handed alpha
Helix 40
AE4
B
265 269Right-handed 310
Helix 41
AE5
B
306 310Right-handed 310
Helix 42
AE6
B
331 345Right-handed alpha
Helix 43
AE7
B
363 381Right-handed alpha
Helix 44
AE8
B
398 405Right-handed 310
Helix 45
AE9
B
422 435Right-handed alpha
Helix 46
AF1
B
437 448Right-handed 310
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There are 6 sheets in PDB entry 8Y9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
75 79parallel
Strand 3
A
121 125parallel
Strand 4
A
177 182parallel
Strand 5
A
235 240parallel
Strand 6
A
272 275parallel
Strand 7
A
349 353parallel
Strand 8
A
385 390parallel
Strand 9
A
7 11parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
280 290parallel
Strand 3
A
297 302anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
418 421anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
75 79parallel
Strand 3
B
121 125parallel
Strand 4
B
177 182parallel
Strand 5
B
235 240parallel
Strand 6
B
272 275parallel
Strand 7
B
349 353parallel
Strand 8
B
385 390parallel
Strand 9
B
7 11parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
280 290parallel
Strand 3
B
297 302anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
410 413first strand
Strand 2
B
418 421anti-parallel
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