Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9R entry

There are 2 chains in PDB entry 8Y9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 17ASP 301
B
 HIS 17TYR 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8Y9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 34Right-handed alpha
Helix 2
AA2
A
35 37Right-handed 310
Helix 3
AA3
A
41 55Right-handed alpha
Helix 4
AA4
A
57 72Right-handed alpha
Helix 5
AA5
A
76 95Right-handed alpha
Helix 6
AA6
A
96 100Right-handed 310
Helix 7
AA7
A
101 111Right-handed alpha
Helix 8
AA8
A
112 115Right-handed 310
Helix 9
AA9
A
117 135Right-handed alpha
Helix 10
AB1
A
144 157Right-handed alpha
Helix 11
AB2
A
159 175Right-handed alpha
Helix 12
AB3
A
181 187Right-handed alpha
Helix 13
AB4
A
188 198Right-handed alpha
Helix 14
AB5
A
203 215Right-handed alpha
Helix 15
AB6
A
222 224Right-handed 310
Helix 16
AB7
A
225 236Right-handed alpha
Helix 17
AB8
A
237 239Right-handed 310
Helix 18
AB9
A
241 260Right-handed alpha
Helix 19
AC1
A
261 265Right-handed 310
Helix 20
AC2
A
266 278Right-handed alpha
Helix 21
AC3
A
282 297Right-handed alpha
Helix 22
AC4
B
18 34Right-handed alpha
Helix 23
AC5
B
35 37Right-handed 310
Helix 24
AC6
B
41 55Right-handed alpha
Helix 25
AC7
B
57 72Right-handed alpha
Helix 26
AC8
B
76 94Right-handed alpha
Helix 27
AC9
B
95 100Right-handed 310
Helix 28
AD1
B
101 111Right-handed alpha
Helix 29
AD2
B
112 115Right-handed 310
Helix 30
AD3
B
117 135Right-handed alpha
Helix 31
AD4
B
144 157Right-handed alpha
Helix 32
AD5
B
159 175Right-handed alpha
Helix 33
AD6
B
181 187Right-handed alpha
Helix 34
AD7
B
188 198Right-handed alpha
Helix 35
AD8
B
203 217Right-handed alpha
Helix 36
AD9
B
222 224Right-handed 310
Helix 37
AE1
B
225 236Right-handed alpha
Helix 38
AE2
B
237 239Right-handed 310
Helix 39
AE3
B
241 260Right-handed alpha
Helix 40
AE4
B
261 265Right-handed 310
Helix 41
AE5
B
266 278Right-handed alpha
Helix 42
AE6
B
282 299Right-handed alpha
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There are no sheets in PDB entry 8Y9R
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