Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9S entry

There are 4 chains in PDB entry 8Y9S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3GLY 584
B
 GLU 1SER 122
C
 HIS 3GLY 584
D
 GLU 1SER 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8Y9S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
15 31Right-handed alpha
Helix 3
AA3
A
35 56Right-handed alpha
Helix 4
AA4
A
65 76Right-handed alpha
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
119 130Right-handed alpha
Helix 7
AA7
A
131 146Right-handed alpha
Helix 8
AA8
A
150 169Right-handed alpha
Helix 9
AA9
A
180 223Right-handed alpha
Helix 10
AB1
A
227 248Right-handed alpha
Helix 11
AB2
A
250 267Right-handed alpha
Helix 12
AB3
A
268 271Right-handed 310
Helix 13
AB4
A
277 281Right-handed 310
Helix 14
AB5
A
282 293Right-handed alpha
Helix 15
AB6
A
305 310Right-handed alpha
Helix 16
AB7
A
314 322Right-handed alpha
Helix 17
AB8
A
322 338Right-handed alpha
Helix 18
AB9
A
342 362Right-handed alpha
Helix 19
AC1
A
365 372Right-handed alpha
Helix 20
AC2
A
373 415Right-handed alpha
Helix 21
AC3
A
419 438Right-handed alpha
Helix 22
AC4
A
441 443Right-handed 310
Helix 23
AC5
A
444 467Right-handed alpha
Helix 24
AC6
A
470 478Right-handed alpha
Helix 25
AC7
A
483 491Right-handed alpha
Helix 26
AC8
A
504 508Right-handed 310
Helix 27
AC9
A
511 516Right-handed alpha
Helix 28
AD1
A
517 536Right-handed alpha
Helix 29
AD2
A
542 561Right-handed alpha
Helix 30
AD3
A
563 582Right-handed alpha
Helix 31
AD4
B
62 65Right-handed 310
Helix 32
AD5
B
87 91Right-handed 310
Helix 33
AD6
B
105 107Right-handed 310
Helix 34
AD7
C
5 31Right-handed alpha
Helix 35
AD8
C
35 56Right-handed alpha
Helix 36
AD9
C
65 78Right-handed alpha
Helix 37
AE1
C
89 93Right-handed alpha
Helix 38
AE2
C
100 105Right-handed alpha
Helix 39
AE3
C
119 130Right-handed alpha
Helix 40
AE4
C
131 146Right-handed alpha
Helix 41
AE5
C
150 169Right-handed alpha
Helix 42
AE6
C
177 207Right-handed alpha
Helix 43
AE7
C
207 223Right-handed alpha
Helix 44
AE8
C
227 248Right-handed alpha
Helix 45
AE9
C
250 267Right-handed alpha
Helix 46
AF1
C
268 271Right-handed 310
Helix 47
AF2
C
277 281Right-handed 310
Helix 48
AF3
C
282 292Right-handed alpha
Helix 49
AF4
C
305 310Right-handed alpha
Helix 50
AF5
C
314 322Right-handed alpha
Helix 51
AF6
C
322 338Right-handed alpha
Helix 52
AF7
C
342 361Right-handed alpha
Helix 53
AF8
C
365 372Right-handed alpha
Helix 54
AF9
C
373 415Right-handed alpha
Helix 55
AG1
C
419 439Right-handed alpha
Helix 56
AG2
C
441 467Right-handed alpha
Helix 57
AG3
C
470 479Right-handed alpha
Helix 58
AG4
C
480 482Right-handed 310
Helix 59
AG5
C
483 490Right-handed alpha
Helix 60
AG6
C
503 508Right-handed alpha
Helix 61
AG7
C
511 516Right-handed alpha
Helix 62
AG8
C
517 536Right-handed alpha
Helix 63
AG9
C
542 561Right-handed alpha
Helix 64
AH1
C
563 582Right-handed alpha
Helix 65
AH2
D
28 32Right-handed 310
Helix 66
AH3
D
62 65Right-handed 310
Helix 67
AH4
D
87 91Right-handed 310
Helix 68
AH5
D
105 107Right-handed 310
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There are 7 sheets in PDB entry 8Y9S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
119 120parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
93 99anti-parallel
Strand 5
B
109 112anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
93 99anti-parallel
Strand 5
B
116 117anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
18 24anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
116 120parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
46 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
116 120parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
109 112anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il