Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9T entry

There are 2 chains in PDB entry 8Y9T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5GLY 584
B
 GLU 1SER 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8Y9T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 15Right-handed alpha
Helix 2
AA2
A
16 31Right-handed alpha
Helix 3
AA3
A
39 54Right-handed alpha
Helix 4
AA4
A
65 75Right-handed alpha
Helix 5
AA5
A
95 105Right-handed alpha
Helix 6
AA6
A
120 127Right-handed alpha
Helix 7
AA7
A
131 146Right-handed alpha
Helix 8
AA8
A
150 171Right-handed alpha
Helix 9
AA9
A
178 206Right-handed alpha
Helix 10
AB1
A
207 223Right-handed alpha
Helix 11
AB2
A
227 248Right-handed alpha
Helix 12
AB3
A
251 267Right-handed alpha
Helix 13
AB4
A
268 271Right-handed 310
Helix 14
AB5
A
277 281Right-handed 310
Helix 15
AB6
A
282 293Right-handed alpha
Helix 16
AB7
A
314 337Right-handed alpha
Helix 17
AB8
A
342 361Right-handed alpha
Helix 18
AB9
A
365 370Right-handed alpha
Helix 19
AC1
A
372 415Right-handed alpha
Helix 20
AC2
A
419 438Right-handed alpha
Helix 21
AC3
A
441 443Right-handed 310
Helix 22
AC4
A
444 466Right-handed alpha
Helix 23
AC5
A
470 479Right-handed alpha
Helix 24
AC6
A
480 490Right-handed alpha
Helix 25
AC7
A
504 508Right-handed 310
Helix 26
AC8
A
510 516Right-handed 310
Helix 27
AC9
A
517 536Right-handed alpha
Helix 28
AD1
A
540 559Right-handed alpha
Helix 29
AD2
A
563 584Right-handed alpha
Helix 30
AD3
B
28 32Right-handed 310
Helix 31
AD4
B
87 91Right-handed 310
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There are 4 sheets in PDB entry 8Y9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
120 124parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
120 124parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
115 116anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
111 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il