Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9Y entry

There are 4 chains in PDB entry 8Y9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14ALA 778
Y
 PHE 2LYS 430
E
 GLN 2PHE 59
B
 ALA 2GLY 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8Y9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 34Right-handed alpha
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
59 78Right-handed alpha
Helix 4
AA4
A
82 94Right-handed alpha
Helix 5
AA5
A
111 117Right-handed alpha
Helix 6
AA6
A
130 148Right-handed alpha
Helix 7
AA7
A
160 168Right-handed alpha
Helix 8
AA8
A
177 188Right-handed alpha
Helix 9
AA9
A
192 196Right-handed 310
Helix 10
AB1
A
208 214Right-handed alpha
Helix 11
AB2
A
215 218Right-handed 310
Helix 12
AB3
A
231 242Right-handed alpha
Helix 13
AB4
A
262 273Right-handed alpha
Helix 14
AB5
A
283 299Right-handed alpha
Helix 15
AB6
A
301 306Right-handed alpha
Helix 16
AB7
A
333 341Right-handed alpha
Helix 17
AB8
A
357 362Right-handed alpha
Helix 18
AB9
A
374 376Right-handed 310
Helix 19
AC1
A
377 384Right-handed alpha
Helix 20
AC2
A
410 427Right-handed alpha
Helix 21
AC3
A
438 451Right-handed alpha
Helix 22
AC4
A
466 472Right-handed alpha
Helix 23
AC5
A
485 489Right-handed 310
Helix 24
AC6
A
499 503Right-handed 310
Helix 25
AC7
A
515 528Right-handed alpha
Helix 26
AC8
A
543 550Right-handed alpha
Helix 27
AC9
A
554 562Right-handed alpha
Helix 28
AD1
A
571 619Right-handed alpha
Helix 29
AD2
A
623 642Right-handed alpha
Helix 30
AD3
A
653 665Right-handed alpha
Helix 31
AD4
A
672 676Right-handed 310
Helix 32
AD5
A
680 704Right-handed alpha
Helix 33
AD6
A
704 738Right-handed alpha
Helix 34
AD7
A
739 743Right-handed 310
Helix 35
AD8
A
747 777Right-handed alpha
Helix 36
AD9
Y
3 11Right-handed alpha
Helix 37
AE1
Y
11 31Right-handed alpha
Helix 38
AE2
Y
42 46Right-handed 310
Helix 39
AE3
Y
74 89Right-handed alpha
Helix 40
AE4
Y
92 102Right-handed alpha
Helix 41
AE5
Y
102 137Right-handed alpha
Helix 42
AE6
Y
145 174Right-handed alpha
Helix 43
AE7
Y
177 202Right-handed alpha
Helix 44
AE8
Y
214 236Right-handed alpha
Helix 45
AE9
Y
271 292Right-handed alpha
Helix 46
AF1
Y
295 304Right-handed alpha
Helix 47
AF2
Y
308 331Right-handed alpha
Helix 48
AF3
Y
332 343Right-handed alpha
Helix 49
AF4
Y
353 380Right-handed alpha
Helix 50
AF5
Y
380 390Right-handed alpha
Helix 51
AF6
Y
400 423Right-handed alpha
Helix 52
AF7
E
3 18Right-handed alpha
Helix 53
AF8
E
22 59Right-handed alpha
Helix 54
AF9
B
3 20Right-handed alpha
Helix 55
AG1
B
36 43Right-handed alpha
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There are 9 sheets in PDB entry 8Y9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
97 99parallel
Strand 3
A
389 391parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
172 176parallel
Strand 3
A
124 128parallel
Strand 4
A
203 206parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 226first strand
Strand 2
A
349 356anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
258 261anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
313 316anti-parallel
Strand 3
A
323 324anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
B
64 66anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
533 540parallel
Strand 3
A
406 408parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
533 540parallel
Strand 3
A
506 509parallel
Strand 4
A
432 435parallel
Strand 5
A
480 483parallel
Strand 6
A
456 459parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
238 242first strand
Strand 2
Y
261 265anti-parallel
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