Analysis of interatomic Contacts of Structural Units in PDB entry:
8Y9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8Y9Z entry

There are 5 chains in PDB entry 8Y9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14ALA 778
Y
 PHE 2LYS 430
E
 GLN 2PHE 59
V
 GLN 1SER 116
B
 ASP 34LEU 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8Y9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
42 55Right-handed alpha
Helix 3
AA3
A
57 60Right-handed 310
Helix 4
AA4
A
61 77Right-handed alpha
Helix 5
AA5
A
82 94Right-handed alpha
Helix 6
AA6
A
107 110Right-handed 310
Helix 7
AA7
A
111 117Right-handed alpha
Helix 8
AA8
A
130 149Right-handed alpha
Helix 9
AA9
A
160 169Right-handed alpha
Helix 10
AB1
A
177 188Right-handed alpha
Helix 11
AB2
A
192 196Right-handed 310
Helix 12
AB3
A
208 213Right-handed alpha
Helix 13
AB4
A
215 219Right-handed 310
Helix 14
AB5
A
231 242Right-handed alpha
Helix 15
AB6
A
262 274Right-handed alpha
Helix 16
AB7
A
283 299Right-handed alpha
Helix 17
AB8
A
301 305Right-handed alpha
Helix 18
AB9
A
332 341Right-handed alpha
Helix 19
AC1
A
356 361Right-handed alpha
Helix 20
AC2
A
377 384Right-handed alpha
Helix 21
AC3
A
410 427Right-handed alpha
Helix 22
AC4
A
439 449Right-handed alpha
Helix 23
AC5
A
450 454Right-handed 310
Helix 24
AC6
A
466 474Right-handed alpha
Helix 25
AC7
A
485 488Right-handed 310
Helix 26
AC8
A
515 524Right-handed alpha
Helix 27
AC9
A
543 550Right-handed alpha
Helix 28
AD1
A
556 562Right-handed 310
Helix 29
AD2
A
574 619Right-handed alpha
Helix 30
AD3
A
623 642Right-handed alpha
Helix 31
AD4
A
655 665Right-handed alpha
Helix 32
AD5
A
672 676Right-handed 310
Helix 33
AD6
A
680 704Right-handed alpha
Helix 34
AD7
A
705 735Right-handed alpha
Helix 35
AD8
A
736 745Right-handed 310
Helix 36
AD9
A
749 777Right-handed alpha
Helix 37
AE1
Y
3 9Right-handed alpha
Helix 38
AE2
Y
11 31Right-handed alpha
Helix 39
AE3
Y
32 34Right-handed 310
Helix 40
AE4
Y
74 88Right-handed alpha
Helix 41
AE5
Y
92 97Right-handed alpha
Helix 42
AE6
Y
102 107Right-handed alpha
Helix 43
AE7
Y
109 137Right-handed alpha
Helix 44
AE8
Y
145 173Right-handed alpha
Helix 45
AE9
Y
177 189Right-handed alpha
Helix 46
AF1
Y
190 202Right-handed alpha
Helix 47
AF2
Y
213 236Right-handed alpha
Helix 48
AF3
Y
271 288Right-handed alpha
Helix 49
AF4
Y
294 304Right-handed alpha
Helix 50
AF5
Y
308 332Right-handed alpha
Helix 51
AF6
Y
332 344Right-handed alpha
Helix 52
AF7
Y
353 390Right-handed alpha
Helix 53
AF8
Y
399 419Right-handed alpha
Helix 54
AF9
Y
420 424Right-handed 310
Helix 55
AG1
E
3 15Right-handed alpha
Helix 56
AG2
E
16 18Right-handed 310
Helix 57
AG3
E
22 59Right-handed alpha
Helix 58
AG4
V
86 90Right-handed 310
Helix 59
AG5
B
35 60Right-handed alpha
Helix 60
AG6
B
73 84Right-handed alpha
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There are 11 sheets in PDB entry 8Y9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
172 176parallel
Strand 3
A
124 128parallel
Strand 4
A
204 207parallel
Strand 5
A
367 371parallel
Strand 6
A
97 99parallel
Strand 7
A
389 391parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
351 355anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
258 261anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
323 324anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
533 540parallel
Strand 3
A
406 408parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
533 540parallel
Strand 3
A
506 509parallel
Strand 4
A
432 435parallel
Strand 5
A
480 483parallel
Strand 6
A
456 459parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
238 242first strand
Strand 2
Y
261 265anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
244 245first strand
Strand 2
Y
345 346anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
5 7first strand
Strand 2
V
17 23anti-parallel
Strand 3
V
78 83anti-parallel
Strand 4
V
67 71anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
11 12first strand
Strand 2
V
114 115parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
V
47 51first strand
Strand 2
V
33 37anti-parallel
Strand 3
V
94 98anti-parallel
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