Analysis of interatomic Contacts of Structural Units in PDB entry:
8YA0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YA0 entry

There are 8 chains in PDB entry 8YA0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 14	ALA 778
Y	PHE 2	LYS 430
E	GLN 2	PHE 59
V	GLN 1	SER 116
B	ALA 2	SER 68
C	VAL 2	SER 112
G	LYS 3	PHE 64
G	VAL 68	ILE 229

There are 60 helices in PDB entry 8YA0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	33	Right-handed alpha
Helix 2	AA2	A	42	55	Right-handed alpha
Helix 3	AA3	A	61	77	Right-handed alpha
Helix 4	AA4	A	82	94	Right-handed alpha
Helix 5	AA5	A	105	118	Right-handed alpha
Helix 6	AA6	A	130	149	Right-handed alpha
Helix 7	AA7	A	160	169	Right-handed alpha
Helix 8	AA8	A	177	188	Right-handed alpha
Helix 9	AA9	A	192	196	Right-handed 310
Helix 10	AB1	A	208	214	Right-handed alpha
Helix 11	AB2	A	215	218	Right-handed 310
Helix 12	AB3	A	231	242	Right-handed alpha
Helix 13	AB4	A	262	273	Right-handed alpha
Helix 14	AB5	A	283	299	Right-handed alpha
Helix 15	AB6	A	301	305	Right-handed alpha
Helix 16	AB7	A	332	342	Right-handed alpha
Helix 17	AB8	A	357	362	Right-handed alpha
Helix 18	AB9	A	374	376	Right-handed 310
Helix 19	AC1	A	377	384	Right-handed alpha
Helix 20	AC2	A	410	427	Right-handed alpha
Helix 21	AC3	A	438	451	Right-handed alpha
Helix 22	AC4	A	463	465	Right-handed 310
Helix 23	AC5	A	466	474	Right-handed alpha
Helix 24	AC6	A	498	502	Right-handed 310
Helix 25	AC7	A	515	528	Right-handed alpha
Helix 26	AC8	A	543	550	Right-handed alpha
Helix 27	AC9	A	553	557	Right-handed 310
Helix 28	AD1	A	572	619	Right-handed alpha
Helix 29	AD2	A	623	642	Right-handed alpha
Helix 30	AD3	A	653	665	Right-handed alpha
Helix 31	AD4	A	672	676	Right-handed 310
Helix 32	AD5	A	680	704	Right-handed alpha
Helix 33	AD6	A	705	742	Right-handed alpha
Helix 34	AD7	A	743	745	Right-handed 310
Helix 35	AD8	A	747	777	Right-handed alpha
Helix 36	AD9	Y	3	9	Right-handed alpha
Helix 37	AE1	Y	11	33	Right-handed alpha
Helix 38	AE2	Y	40	47	Right-handed alpha
Helix 39	AE3	Y	74	89	Right-handed alpha
Helix 40	AE4	Y	92	102	Right-handed alpha
Helix 41	AE5	Y	104	137	Right-handed alpha
Helix 42	AE6	Y	145	173	Right-handed alpha
Helix 43	AE7	Y	177	202	Right-handed alpha
Helix 44	AE8	Y	213	236	Right-handed alpha
Helix 45	AE9	Y	271	290	Right-handed alpha
Helix 46	AF1	Y	294	304	Right-handed alpha
Helix 47	AF2	Y	308	331	Right-handed alpha
Helix 48	AF3	Y	332	344	Right-handed alpha
Helix 49	AF4	Y	353	388	Right-handed alpha
Helix 50	AF5	Y	399	421	Right-handed alpha
Helix 51	AF6	Y	422	424	Right-handed 310
Helix 52	AF7	E	3	16	Right-handed alpha
Helix 53	AF8	E	22	59	Right-handed alpha
Helix 54	AF9	V	86	90	Right-handed 310
Helix 55	AG1	B	3	20	Right-handed alpha
Helix 56	AG2	B	21	24	Right-handed 310
Helix 57	AG3	B	36	43	Right-handed alpha
Helix 58	AG4	C	28	32	Right-handed 310
Helix 59	AG5	C	83	87	Right-handed 310
Helix 60	AG6	G	57	62	Right-handed alpha

There are 15 sheets in PDB entry 8YA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	154	first strand
Strand 2	A	172	176	parallel
Strand 3	A	124	128	parallel
Strand 4	A	203	207	parallel
Strand 5	A	367	371	parallel
Strand 6	A	97	99	parallel
Strand 7	A	389	391	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	B	64	67	anti-parallel
Strand 3	A	220	226	parallel
Strand 4	A	349	356	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	258	261	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	309	first strand
Strand 2	A	312	316	anti-parallel
Strand 3	A	323	324	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	533	540	parallel
Strand 3	A	406	408	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	A	533	540	parallel
Strand 3	A	506	509	parallel
Strand 4	A	432	435	parallel
Strand 5	A	480	483	parallel
Strand 6	A	456	459	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	57	60	first strand
Strand 2	Y	63	66	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	261	265	first strand
Strand 2	Y	238	242	anti-parallel
Strand 3	E	18	19	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	244	245	first strand
Strand 2	Y	345	346	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	4	7	first strand
Strand 2	V	17	24	anti-parallel
Strand 3	V	77	83	anti-parallel
Strand 4	V	67	72	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	47	52	first strand
Strand 2	V	33	37	anti-parallel
Strand 3	V	91	98	anti-parallel
Strand 4	V	111	113	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	77	79	anti-parallel
Strand 4	C	70	72	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	102	103	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	107	109	anti-parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	22	first strand
Strand 2	G	25	36	anti-parallel
Strand 3	G	41	48	anti-parallel
Strand 4	G	217	227	anti-parallel
Strand 5	G	199	208	anti-parallel
Strand 6	G	148	155	anti-parallel
Strand 7	G	160	170	anti-parallel
Strand 8	G	176	187	anti-parallel
Strand 9	G	92	100	anti-parallel
Strand 10	G	105	115	anti-parallel
Strand 11	G	118	128	anti-parallel
Strand 12	G	12	22	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YA0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YA0