Analysis of interatomic Contacts of Structural Units in PDB entry:
8YA2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YA2 entry

There are 7 chains in PDB entry 8YA2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14ALA 778
Y
 PHE 2LYS 430
E
 GLN 2PHE 59
B
 ALA 2PRO 68
C
 VAL 2SER 112
G
 LYS 3PHE 64
G
 VAL 68ILE 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8YA2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 34Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
82 94Right-handed alpha
Helix 5
AA5
A
105 118Right-handed alpha
Helix 6
AA6
A
130 149Right-handed alpha
Helix 7
AA7
A
160 169Right-handed alpha
Helix 8
AA8
A
177 187Right-handed alpha
Helix 9
AA9
A
208 214Right-handed alpha
Helix 10
AB1
A
231 243Right-handed alpha
Helix 11
AB2
A
245 248Right-handed 310
Helix 12
AB3
A
262 274Right-handed alpha
Helix 13
AB4
A
280 282Right-handed 310
Helix 14
AB5
A
283 299Right-handed alpha
Helix 15
AB6
A
301 305Right-handed alpha
Helix 16
AB7
A
332 341Right-handed alpha
Helix 17
AB8
A
356 363Right-handed alpha
Helix 18
AB9
A
377 384Right-handed alpha
Helix 19
AC1
A
410 427Right-handed alpha
Helix 20
AC2
A
439 449Right-handed alpha
Helix 21
AC3
A
463 465Right-handed 310
Helix 22
AC4
A
466 473Right-handed alpha
Helix 23
AC5
A
474 476Right-handed 310
Helix 24
AC6
A
484 488Right-handed 310
Helix 25
AC7
A
499 503Right-handed 310
Helix 26
AC8
A
515 525Right-handed alpha
Helix 27
AC9
A
543 550Right-handed alpha
Helix 28
AD1
A
552 556Right-handed 310
Helix 29
AD2
A
557 562Right-handed 310
Helix 30
AD3
A
571 619Right-handed alpha
Helix 31
AD4
A
623 642Right-handed alpha
Helix 32
AD5
A
653 664Right-handed alpha
Helix 33
AD6
A
667 671Right-handed 310
Helix 34
AD7
A
672 676Right-handed 310
Helix 35
AD8
A
680 704Right-handed alpha
Helix 36
AD9
A
705 742Right-handed alpha
Helix 37
AE1
A
747 776Right-handed alpha
Helix 38
AE2
Y
3 11Right-handed alpha
Helix 39
AE3
Y
11 32Right-handed alpha
Helix 40
AE4
Y
40 50Right-handed alpha
Helix 41
AE5
Y
60 66Right-handed alpha
Helix 42
AE6
Y
74 88Right-handed alpha
Helix 43
AE7
Y
92 100Right-handed alpha
Helix 44
AE8
Y
102 137Right-handed alpha
Helix 45
AE9
Y
148 174Right-handed alpha
Helix 46
AF1
Y
177 202Right-handed alpha
Helix 47
AF2
Y
214 236Right-handed alpha
Helix 48
AF3
Y
271 292Right-handed alpha
Helix 49
AF4
Y
294 304Right-handed alpha
Helix 50
AF5
Y
311 331Right-handed alpha
Helix 51
AF6
Y
332 343Right-handed alpha
Helix 52
AF7
Y
353 389Right-handed alpha
Helix 53
AF8
Y
399 424Right-handed alpha
Helix 54
AF9
E
4 16Right-handed alpha
Helix 55
AG1
E
22 58Right-handed alpha
Helix 56
AG2
B
3 19Right-handed alpha
Helix 57
AG3
B
37 45Right-handed alpha
Helix 58
AG4
C
83 87Right-handed 310
Helix 59
AG5
G
57 62Right-handed alpha
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There are 12 sheets in PDB entry 8YA2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
389 391parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
172 176parallel
Strand 3
A
124 128parallel
Strand 4
A
203 206parallel
Strand 5
A
367 369parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 226first strand
Strand 2
A
349 355anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
258 261anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 309first strand
Strand 2
A
312 315anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
533 536parallel
Strand 3
A
506 508parallel
Strand 4
A
432 435parallel
Strand 5
A
480 483parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
539 540parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
238 242first strand
Strand 2
Y
261 265anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 7first strand
Strand 2
C
21 23anti-parallel
Strand 3
C
77 79anti-parallel
Strand 4
C
70 72anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
46 52anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
88 95anti-parallel
Strand 5
C
101 103anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
46 52anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
88 95anti-parallel
Strand 5
C
107 109anti-parallel
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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 22first strand
Strand 2
G
25 36anti-parallel
Strand 3
G
41 48anti-parallel
Strand 4
G
217 227anti-parallel
Strand 5
G
199 208anti-parallel
Strand 6
G
148 155anti-parallel
Strand 7
G
160 170anti-parallel
Strand 8
G
176 187anti-parallel
Strand 9
G
92 100anti-parallel
Strand 10
G
105 115anti-parallel
Strand 11
G
118 128anti-parallel
Strand 12
G
12 22parallel
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