Analysis of interatomic Contacts of Structural Units in PDB entry:
8YA7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YA7 entry

There is 1 chain in PDB entry 8YA7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 37LYS 407
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8YA7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 85Right-handed alpha
Helix 2
AA2
A
97 102Right-handed alpha
Helix 3
AA3
A
103 119Right-handed alpha
Helix 4
AA4
A
147 150Right-handed 310
Helix 5
AA5
A
151 156Right-handed alpha
Helix 6
AA6
A
180 199Right-handed alpha
Helix 7
AA7
A
211 217Right-handed 310
Helix 8
AA8
A
218 237Right-handed alpha
Helix 9
AA9
A
254 258Right-handed 310
Helix 10
AB1
A
267 272Right-handed alpha
Helix 11
AB2
A
272 289Right-handed alpha
Helix 12
AB3
A
300 303Right-handed 310
Helix 13
AB4
A
311 338Right-handed alpha
Helix 14
AB5
A
360 365Right-handed 310
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There are 3 sheets in PDB entry 8YA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
89 92parallel
Strand 3
A
123 129parallel
Strand 4
A
202 206parallel
Strand 5
A
242 246parallel
Strand 6
A
260 263parallel
Strand 7
A
292 298parallel
Strand 8
A
342 347parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
173 174anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
383 388anti-parallel
Strand 3
A
391 396anti-parallel
Strand 4
A
401 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il