Analysis of interatomic Contacts of Structural Units in PDB entry:
8YA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YA8 entry

There are 7 chains in PDB entry 8YA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1058GLY 1137
B
 GLN 1057THR 1136
C
 HIS 1058GLY 1137
D
 GLN 1057GLY 1137
E
 GLN 1057GLY 1137
F
 HIS 1058THR 1136
G
 HIS 1058GLY 1137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8YA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1058 1090Right-handed alpha
Helix 2
AA2
A
1091 1104Right-handed alpha
Helix 3
AA3
A
1106 1108Right-handed 310
Helix 4
AA4
A
1109 1116Right-handed alpha
Helix 5
AA5
A
1117 1120Right-handed 310
Helix 6
AA6
A
1121 1123Right-handed 310
Helix 7
AA7
A
1124 1137Right-handed alpha
Helix 8
AA8
B
1058 1090Right-handed alpha
Helix 9
AA9
B
1091 1104Right-handed alpha
Helix 10
AB1
B
1106 1108Right-handed 310
Helix 11
AB2
B
1109 1116Right-handed alpha
Helix 12
AB3
B
1117 1120Right-handed 310
Helix 13
AB4
B
1121 1123Right-handed 310
Helix 14
AB5
B
1124 1136Right-handed alpha
Helix 15
AB6
C
1059 1090Right-handed alpha
Helix 16
AB7
C
1091 1104Right-handed alpha
Helix 17
AB8
C
1106 1108Right-handed 310
Helix 18
AB9
C
1109 1115Right-handed alpha
Helix 19
AC1
C
1116 1120Right-handed 310
Helix 20
AC2
C
1121 1137Right-handed alpha
Helix 21
AC3
D
1058 1090Right-handed alpha
Helix 22
AC4
D
1091 1104Right-handed alpha
Helix 23
AC5
D
1106 1108Right-handed 310
Helix 24
AC6
D
1109 1116Right-handed alpha
Helix 25
AC7
D
1117 1120Right-handed 310
Helix 26
AC8
D
1121 1123Right-handed 310
Helix 27
AC9
D
1124 1136Right-handed alpha
Helix 28
AD1
E
1058 1090Right-handed alpha
Helix 29
AD2
E
1091 1105Right-handed alpha
Helix 30
AD3
E
1106 1108Right-handed 310
Helix 31
AD4
E
1109 1116Right-handed alpha
Helix 32
AD5
E
1117 1120Right-handed 310
Helix 33
AD6
E
1121 1123Right-handed 310
Helix 34
AD7
E
1124 1137Right-handed alpha
Helix 35
AD8
F
1059 1090Right-handed alpha
Helix 36
AD9
F
1091 1105Right-handed alpha
Helix 37
AE1
F
1106 1108Right-handed 310
Helix 38
AE2
F
1109 1116Right-handed alpha
Helix 39
AE3
F
1117 1119Right-handed 310
Helix 40
AE4
F
1121 1136Right-handed alpha
Helix 41
AE5
G
1059 1090Right-handed alpha
Helix 42
AE6
G
1091 1104Right-handed alpha
Helix 43
AE7
G
1106 1108Right-handed 310
Helix 44
AE8
G
1109 1116Right-handed alpha
Helix 45
AE9
G
1117 1119Right-handed 310
Helix 46
AF1
G
1123 1136Right-handed alpha
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There are no sheets in PDB entry 8YA8
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