Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YAA entry

There are 3 chains in PDB entry 8YAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 26LEU 202
A
 ALA 43SER 696
B
 PRO 1ARG 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8YAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
26 38Right-handed alpha
Helix 2
AA2
C
85 91Right-handed 310
Helix 3
AA3
C
110 115Right-handed 310
Helix 4
AA4
C
133 139Right-handed 310
Helix 5
AA5
C
158 163Right-handed 310
Helix 6
AA6
A
46 59Right-handed alpha
Helix 7
AA7
A
69 73Right-handed 310
Helix 8
AA8
A
79 85Right-handed alpha
Helix 9
AA9
A
135 141Right-handed 310
Helix 10
AB1
A
159 165Right-handed 310
Helix 11
AB2
A
183 189Right-handed 310
Helix 12
AB3
A
207 213Right-handed 310
Helix 13
AB4
A
231 237Right-handed 310
Helix 14
AB5
A
255 261Right-handed 310
Helix 15
AB6
A
279 285Right-handed 310
Helix 16
AB7
A
303 309Right-handed 310
Helix 17
AB8
A
327 332Right-handed 310
Helix 18
AB9
A
351 357Right-handed 310
Helix 19
AC1
A
375 380Right-handed 310
Helix 20
AC2
A
446 450Right-handed alpha
Helix 21
AC3
A
472 477Right-handed 310
Helix 22
AC4
A
495 500Right-handed 310
Helix 23
AC5
A
520 525Right-handed 310
Helix 24
AC6
A
543 549Right-handed 310
Helix 25
AC7
A
591 597Right-handed 310
Helix 26
AC8
A
616 621Right-handed 310
Helix 27
AC9
A
639 643Right-handed 310
Helix 28
AD1
A
665 670Right-handed alpha
Helix 29
AD2
A
672 676Right-handed 310
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There are 8 sheets in PDB entry 8YAA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 40first strand
Strand 2
C
81 82anti-parallel
Strand 3
C
103 107parallel
Strand 4
C
127 129parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
70 74anti-parallel
Strand 3
C
96 98parallel
Strand 4
C
120 122parallel
Strand 5
C
144 146parallel
Strand 6
C
168 170parallel
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There are 25 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
94 99anti-parallel
Strand 3
A
122 124parallel
Strand 4
A
146 148parallel
Strand 5
A
170 172parallel
Strand 6
A
194 196parallel
Strand 7
A
218 220parallel
Strand 8
A
242 244parallel
Strand 9
A
266 268parallel
Strand 10
A
290 292parallel
Strand 11
A
314 316parallel
Strand 12
A
338 340parallel
Strand 13
A
362 364parallel
Strand 14
A
386 388parallel
Strand 15
A
410 412parallel
Strand 16
A
434 436parallel
Strand 17
A
458 460parallel
Strand 18
A
482 484parallel
Strand 19
A
506 508parallel
Strand 20
A
530 532parallel
Strand 21
A
554 556parallel
Strand 22
A
578 580parallel
Strand 23
A
603 604parallel
Strand 24
A
626 628parallel
Strand 25
A
650 652parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
129 130parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
177 178parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
249 252parallel
Strand 3
A
273 274parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
345 348parallel
Strand 3
A
369 372parallel
Strand 4
A
393 396parallel
Strand 5
A
417 420parallel
Strand 6
A
441 445parallel
Strand 7
A
465 468parallel
Strand 8
A
489 493parallel
Strand 9
A
513 516parallel
Strand 10
A
537 540parallel
Strand 11
A
561 562parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 612first strand
Strand 2
A
633 637parallel
Strand 3
A
657 661parallel
Strand 4
A
681 683parallel
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