Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YAB entry

There are 5 chains in PDB entry 8YAB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 788
B	ASP 7	LEU 631
C	MET 1	PRO 199
E	ALA 2	PRO 490
D	MET 22	ASN 521

There are102 helices in PDB entry 8YAB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	16	Right-handed alpha
Helix 2	AA2	A	18	34	Right-handed alpha
Helix 3	AA3	A	38	54	Right-handed alpha
Helix 4	AA4	A	62	74	Right-handed alpha
Helix 5	AA5	A	79	93	Right-handed alpha
Helix 6	AA6	A	108	121	Right-handed alpha
Helix 7	AA7	A	123	126	Right-handed 310
Helix 8	AA8	A	127	141	Right-handed alpha
Helix 9	AA9	A	150	164	Right-handed alpha
Helix 10	AB1	A	169	183	Right-handed alpha
Helix 11	AB2	A	234	244	Right-handed alpha
Helix 12	AB3	A	245	253	Right-handed alpha
Helix 13	AB4	A	290	296	Right-handed alpha
Helix 14	AB5	A	296	304	Right-handed alpha
Helix 15	AB6	A	318	339	Right-handed alpha
Helix 16	AB7	A	340	354	Right-handed alpha
Helix 17	AB8	A	363	365	Right-handed 310
Helix 18	AB9	A	366	377	Right-handed alpha
Helix 19	AC1	A	387	394	Right-handed alpha
Helix 20	AC2	A	395	399	Right-handed 310
Helix 21	AC3	A	405	417	Right-handed alpha
Helix 22	AC4	A	422	432	Right-handed alpha
Helix 23	AC5	A	432	443	Right-handed alpha
Helix 24	AC6	A	447	455	Right-handed alpha
Helix 25	AC7	A	456	458	Right-handed 310
Helix 26	AC8	A	463	473	Right-handed alpha
Helix 27	AC9	A	473	487	Right-handed alpha
Helix 28	AD1	A	503	512	Right-handed alpha
Helix 29	AD2	A	513	516	Right-handed 310
Helix 30	AD3	A	518	523	Right-handed alpha
Helix 31	AD4	A	534	541	Right-handed alpha
Helix 32	AD5	A	547	555	Right-handed alpha
Helix 33	AD6	A	556	569	Right-handed alpha
Helix 34	AD7	A	573	588	Right-handed alpha
Helix 35	AD8	A	597	616	Right-handed alpha
Helix 36	AD9	A	618	623	Right-handed alpha
Helix 37	AE1	A	623	633	Right-handed alpha
Helix 38	AE2	A	633	640	Right-handed alpha
Helix 39	AE3	A	643	654	Right-handed alpha
Helix 40	AE4	A	664	683	Right-handed alpha
Helix 41	AE5	A	695	710	Right-handed alpha
Helix 42	AE6	A	715	732	Right-handed alpha
Helix 43	AE7	A	745	752	Right-handed alpha
Helix 44	AE8	A	752	761	Right-handed alpha
Helix 45	AE9	A	761	769	Right-handed alpha
Helix 46	AF1	B	9	19	Right-handed alpha
Helix 47	AF2	B	19	25	Right-handed alpha
Helix 48	AF3	B	27	30	Right-handed 310
Helix 49	AF4	B	31	39	Right-handed alpha
Helix 50	AF5	B	46	60	Right-handed alpha
Helix 51	AF6	B	67	84	Right-handed alpha
Helix 52	AF7	B	92	108	Right-handed alpha
Helix 53	AF8	B	114	130	Right-handed alpha
Helix 54	AF9	B	143	161	Right-handed alpha
Helix 55	AG1	B	168	176	Right-handed alpha
Helix 56	AG2	B	181	204	Right-handed alpha
Helix 57	AG3	B	262	278	Right-handed alpha
Helix 58	AG4	B	279	281	Right-handed 310
Helix 59	AG5	B	282	297	Right-handed alpha
Helix 60	AG6	B	304	307	Right-handed 310
Helix 61	AG7	B	308	316	Right-handed alpha
Helix 62	AG8	B	320	335	Right-handed alpha
Helix 63	AG9	B	342	355	Right-handed alpha
Helix 64	AH1	B	361	374	Right-handed alpha
Helix 65	AH2	B	395	399	Right-handed alpha
Helix 66	AH3	B	408	425	Right-handed alpha
Helix 67	AH4	B	436	454	Right-handed alpha
Helix 68	AH5	B	459	476	Right-handed alpha
Helix 69	AH6	B	479	497	Right-handed alpha
Helix 70	AH7	B	500	511	Right-handed alpha
Helix 71	AH8	B	512	530	Right-handed alpha
Helix 72	AH9	B	536	548	Right-handed alpha
Helix 73	AI1	B	552	565	Right-handed alpha
Helix 74	AI2	B	569	587	Right-handed alpha
Helix 75	AI3	B	591	602	Right-handed alpha
Helix 76	AI4	B	605	622	Right-handed alpha
Helix 77	AI5	B	623	630	Right-handed alpha
Helix 78	AI6	C	43	71	Right-handed alpha
Helix 79	AI7	C	131	150	Right-handed alpha
Helix 80	AI8	C	155	160	Right-handed 310
Helix 81	AI9	C	162	174	Right-handed alpha
Helix 82	AJ1	C	183	195	Right-handed alpha
Helix 83	AJ2	E	27	39	Right-handed alpha
Helix 84	AJ3	E	40	42	Right-handed 310
Helix 85	AJ4	E	47	59	Right-handed alpha
Helix 86	AJ5	E	125	143	Right-handed alpha
Helix 87	AJ6	E	153	158	Right-handed alpha
Helix 88	AJ7	E	159	164	Right-handed alpha
Helix 89	AJ8	E	176	186	Right-handed alpha
Helix 90	AJ9	E	276	282	Right-handed alpha
Helix 91	AK1	E	484	489	Right-handed alpha
Helix 92	AK2	D	34	39	Right-handed alpha
Helix 93	AK3	D	120	124	Right-handed 310
Helix 94	AK4	D	134	144	Right-handed alpha
Helix 95	AK5	D	196	201	Right-handed alpha
Helix 96	AK6	D	239	242	Right-handed 310
Helix 97	AK7	D	285	291	Right-handed alpha
Helix 98	AK8	D	317	328	Right-handed alpha
Helix 99	AK9	D	340	352	Right-handed alpha
Helix 100	AL1	D	361	365	Right-handed 310
Helix 101	AL2	D	497	509	Right-handed alpha
Helix 102	AL3	D	510	520	Right-handed alpha

There are 18 sheets in PDB entry 8YAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	28	first strand
Strand 2	C	4	9	anti-parallel
Strand 3	C	120	126	anti-parallel
Strand 4	C	111	117	anti-parallel
Strand 5	C	95	99	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	105	106	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	26	first strand
Strand 2	E	3	9	anti-parallel
Strand 3	E	105	110	anti-parallel
Strand 4	E	96	100	anti-parallel
Strand 5	E	83	84	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	91	92	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	209	first strand
Strand 2	E	460	461	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	220	first strand
Strand 2	E	230	234	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	253	254	first strand
Strand 2	E	446	447	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	322	325	first strand
Strand 2	E	340	343	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	328	330	first strand
Strand 2	E	335	337	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	356	357	first strand
Strand 2	E	429	432	anti-parallel
Strand 3	E	473	475	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	370	first strand
Strand 2	E	406	407	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	63	66	anti-parallel
Strand 3	D	54	57	anti-parallel
Strand 4	D	45	48	anti-parallel
Strand 5	D	472	475	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	103	107	anti-parallel
Strand 3	D	113	119	anti-parallel
Strand 4	D	126	132	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	160	first strand
Strand 2	D	163	168	anti-parallel
Strand 3	D	172	175	anti-parallel
Strand 4	D	189	192	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	207	first strand
Strand 2	D	214	217	anti-parallel
Strand 3	D	221	224	anti-parallel
Strand 4	D	236	237	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	264	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	280	284	anti-parallel
Strand 4	D	415	416	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	428	432	first strand
Strand 2	D	437	443	anti-parallel
Strand 3	D	447	453	anti-parallel
Strand 4	D	460	464	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	484	first strand
Strand 2	D	489	492	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YAB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAB