Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YAD entry

There are 2 chains in PDB entry 8YAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 CYS 931GLY 2443
C
 LEU 157LEU 2448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are199 helices in PDB entry 8YAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
932 947Right-handed alpha
Helix 2
AA2
B
950 956Right-handed alpha
Helix 3
AA3
B
956 966Right-handed alpha
Helix 4
AA4
B
989 999Right-handed alpha
Helix 5
AA5
B
1002 1012Right-handed alpha
Helix 6
AA6
B
1019 1023Right-handed 310
Helix 7
AA7
B
1024 1031Right-handed alpha
Helix 8
AA8
B
1031 1046Right-handed alpha
Helix 9
AA9
B
1049 1065Right-handed alpha
Helix 10
AB1
B
1071 1078Right-handed alpha
Helix 11
AB2
B
1080 1089Right-handed alpha
Helix 12
AB3
B
1094 1101Right-handed alpha
Helix 13
AB4
B
1106 1110Right-handed 310
Helix 14
AB5
B
1112 1119Right-handed alpha
Helix 15
AB6
B
1123 1131Right-handed alpha
Helix 16
AB7
B
1145 1152Right-handed alpha
Helix 17
AB8
B
1157 1161Right-handed 310
Helix 18
AB9
B
1184 1191Right-handed alpha
Helix 19
AC1
B
1199 1206Right-handed alpha
Helix 20
AC2
B
1207 1220Right-handed alpha
Helix 21
AC3
B
1225 1243Right-handed alpha
Helix 22
AC4
B
1247 1262Right-handed alpha
Helix 23
AC5
B
1266 1278Right-handed alpha
Helix 24
AC6
B
1279 1284Right-handed alpha
Helix 25
AC7
B
1289 1306Right-handed alpha
Helix 26
AC8
B
1308 1330Right-handed alpha
Helix 27
AC9
B
1336 1353Right-handed alpha
Helix 28
AD1
B
1360 1367Right-handed alpha
Helix 29
AD2
B
1370 1375Right-handed alpha
Helix 30
AD3
B
1375 1380Right-handed alpha
Helix 31
AD4
B
1384 1392Right-handed alpha
Helix 32
AD5
B
1400 1405Right-handed alpha
Helix 33
AD6
B
1440 1445Right-handed alpha
Helix 34
AD7
B
1446 1449Right-handed 310
Helix 35
AD8
B
1456 1465Right-handed alpha
Helix 36
AD9
B
1470 1475Right-handed alpha
Helix 37
AE1
B
1484 1492Right-handed alpha
Helix 38
AE2
B
1495 1502Right-handed alpha
Helix 39
AE3
B
1503 1506Right-handed 310
Helix 40
AE4
B
1509 1513Right-handed 310
Helix 41
AE5
B
1518 1529Right-handed alpha
Helix 42
AE6
B
1535 1543Right-handed alpha
Helix 43
AE7
B
1548 1559Right-handed alpha
Helix 44
AE8
B
1564 1583Right-handed alpha
Helix 45
AE9
B
1596 1612Right-handed alpha
Helix 46
AF1
B
1615 1627Right-handed alpha
Helix 47
AF2
B
1638 1649Right-handed alpha
Helix 48
AF3
B
1658 1663Right-handed alpha
Helix 49
AF4
B
1667 1684Right-handed alpha
Helix 50
AF5
B
1685 1697Right-handed alpha
Helix 51
AF6
B
1700 1719Right-handed alpha
Helix 52
AF7
B
1723 1742Right-handed alpha
Helix 53
AF8
B
1744 1759Right-handed alpha
Helix 54
AF9
B
1768 1784Right-handed alpha
Helix 55
AG1
B
1790 1812Right-handed alpha
Helix 56
AG2
B
1834 1842Right-handed alpha
Helix 57
AG3
B
1847 1856Right-handed 310
Helix 58
AG4
B
1873 1889Right-handed alpha
Helix 59
AG5
B
1890 1902Right-handed alpha
Helix 60
AG6
B
1905 1918Right-handed alpha
Helix 61
AG7
B
1973 1980Right-handed alpha
Helix 62
AG8
B
1981 1984Right-handed 310
Helix 63
AG9
B
1987 2005Right-handed alpha
Helix 64
AH1
B
2007 2014Right-handed alpha
Helix 65
AH2
B
2015 2025Right-handed alpha
Helix 66
AH3
B
2030 2043Right-handed alpha
Helix 67
AH4
B
2045 2065Right-handed alpha
Helix 68
AH5
B
2078 2088Right-handed alpha
Helix 69
AH6
B
2092 2104Right-handed alpha
Helix 70
AH7
B
2105 2107Right-handed 310
Helix 71
AH8
B
2112 2130Right-handed alpha
Helix 72
AH9
B
2131 2149Right-handed alpha
Helix 73
AI1
B
2149 2154Right-handed alpha
Helix 74
AI2
B
2155 2165Right-handed alpha
Helix 75
AI3
B
2166 2167Right-handed 310
Helix 76
AI4
B
2168 2171Right-handed 310
Helix 77
AI5
B
2172 2182Right-handed alpha
Helix 78
AI6
B
2186 2190Right-handed 310
Helix 79
AI7
B
2197 2209Right-handed alpha
Helix 80
AI8
B
2214 2221Right-handed alpha
Helix 81
AI9
B
2228 2248Right-handed alpha
Helix 82
AJ1
B
2250 2256Right-handed alpha
Helix 83
AJ2
B
2257 2282Right-handed alpha
Helix 84
AJ3
B
2284 2307Right-handed alpha
Helix 85
AJ4
B
2317 2328Right-handed alpha
Helix 86
AJ5
B
2330 2342Right-handed alpha
Helix 87
AJ6
B
2346 2355Right-handed alpha
Helix 88
AJ7
B
2360 2371Right-handed alpha
Helix 89
AJ8
B
2374 2387Right-handed alpha
Helix 90
AJ9
B
2391 2399Right-handed alpha
Helix 91
AK1
B
2400 2402Right-handed 310
Helix 92
AK2
B
2408 2419Right-handed alpha
Helix 93
AK3
B
2420 2428Right-handed alpha
Helix 94
AK4
B
2430 2435Right-handed alpha
Helix 95
AK5
B
2436 2441Right-handed alpha
Helix 96
AK6
C
159 164Right-handed alpha
Helix 97
AK7
C
164 176Right-handed alpha
Helix 98
AK8
C
186 205Right-handed alpha
Helix 99
AK9
C
216 224Right-handed alpha
Helix 100
AL1
C
233 248Right-handed alpha
Helix 101
AL2
C
256 263Right-handed alpha
Helix 102
AL3
C
268 286Right-handed alpha
Helix 103
AL4
C
302 312Right-handed alpha
Helix 104
AL5
C
315 331Right-handed alpha
Helix 105
AL6
C
333 349Right-handed alpha
Helix 106
AL7
C
350 359Right-handed alpha
Helix 107
AL8
C
365 375Right-handed alpha
Helix 108
AL9
C
379 390Right-handed alpha
Helix 109
AM1
C
399 423Right-handed alpha
Helix 110
AM2
C
428 438Right-handed alpha
Helix 111
AM3
C
443 451Right-handed alpha
Helix 112
AM4
C
458 468Right-handed alpha
Helix 113
AM5
C
488 517Right-handed alpha
Helix 114
AM6
C
554 565Right-handed alpha
Helix 115
AM7
C
568 583Right-handed alpha
Helix 116
AM8
C
667 672Right-handed 310
Helix 117
AM9
C
683 701Right-handed alpha
Helix 118
AN1
C
726 735Right-handed alpha
Helix 119
AN2
C
735 750Right-handed alpha
Helix 120
AN3
C
827 831Right-handed 310
Helix 121
AN4
C
832 843Right-handed alpha
Helix 122
AN5
C
845 856Right-handed alpha
Helix 123
AN6
C
862 892Right-handed alpha
Helix 124
AN7
C
922 934Right-handed alpha
Helix 125
AN8
C
945 952Right-handed alpha
Helix 126
AN9
C
960 965Right-handed alpha
Helix 127
AO1
C
968 973Right-handed alpha
Helix 128
AO2
C
973 982Right-handed alpha
Helix 129
AO3
C
984 1007Right-handed alpha
Helix 130
AO4
C
1022 1042Right-handed alpha
Helix 131
AO5
C
1075 1099Right-handed alpha
Helix 132
AO6
C
1107 1115Right-handed alpha
Helix 133
AO7
C
1118 1124Right-handed alpha
Helix 134
AO8
C
1125 1141Right-handed alpha
Helix 135
AO9
C
1150 1169Right-handed alpha
Helix 136
AP1
C
1186 1190Right-handed 310
Helix 137
AP2
C
1191 1202Right-handed alpha
Helix 138
AP3
C
1208 1214Right-handed alpha
Helix 139
AP4
C
1215 1218Right-handed 310
Helix 140
AP5
C
1224 1232Right-handed alpha
Helix 141
AP6
C
1245 1262Right-handed alpha
Helix 142
AP7
C
1304 1311Right-handed alpha
Helix 143
AP8
C
1313 1321Right-handed alpha
Helix 144
AP9
C
1350 1362Right-handed alpha
Helix 145
AQ1
C
1374 1379Right-handed alpha
Helix 146
AQ2
C
1408 1415Right-handed alpha
Helix 147
AQ3
C
1416 1421Right-handed alpha
Helix 148
AQ4
C
1442 1454Right-handed alpha
Helix 149
AQ5
C
1455 1458Right-handed 310
Helix 150
AQ6
C
1460 1465Right-handed 310
Helix 151
AQ7
C
1470 1481Right-handed alpha
Helix 152
AQ8
C
1489 1500Right-handed alpha
Helix 153
AQ9
C
1504 1525Right-handed alpha
Helix 154
AR1
C
1535 1545Right-handed alpha
Helix 155
AR2
C
1548 1556Right-handed alpha
Helix 156
AR3
C
1559 1569Right-handed alpha
Helix 157
AR4
C
1575 1591Right-handed alpha
Helix 158
AR5
C
1593 1603Right-handed alpha
Helix 159
AR6
C
1606 1618Right-handed alpha
Helix 160
AR7
C
1623 1637Right-handed alpha
Helix 161
AR8
C
1645 1655Right-handed alpha
Helix 162
AR9
C
1655 1661Right-handed alpha
Helix 163
AS1
C
1667 1672Right-handed alpha
Helix 164
AS2
C
1677 1688Right-handed alpha
Helix 165
AS3
C
1690 1705Right-handed alpha
Helix 166
AS4
C
1713 1729Right-handed alpha
Helix 167
AS5
C
1916 1924Right-handed alpha
Helix 168
AS6
C
1933 1942Right-handed alpha
Helix 169
AS7
C
1946 1963Right-handed alpha
Helix 170
AS8
C
1964 1967Right-handed 310
Helix 171
AS9
C
1971 1992Right-handed alpha
Helix 172
AT1
C
1995 2017Right-handed alpha
Helix 173
AT2
C
2025 2030Right-handed alpha
Helix 174
AT3
C
2032 2045Right-handed alpha
Helix 175
AT4
C
2047 2059Right-handed alpha
Helix 176
AT5
C
2062 2075Right-handed alpha
Helix 177
AT6
C
2078 2088Right-handed alpha
Helix 178
AT7
C
2103 2115Right-handed alpha
Helix 179
AT8
C
2131 2142Right-handed alpha
Helix 180
AT9
C
2143 2145Right-handed 310
Helix 181
AU1
C
2152 2157Right-handed alpha
Helix 182
AU2
C
2157 2171Right-handed alpha
Helix 183
AU3
C
2172 2183Right-handed alpha
Helix 184
AU4
C
2186 2196Right-handed alpha
Helix 185
AU5
C
2201 2214Right-handed alpha
Helix 186
AU6
C
2217 2228Right-handed alpha
Helix 187
AU7
C
2236 2247Right-handed alpha
Helix 188
AU8
C
2253 2261Right-handed alpha
Helix 189
AU9
C
2264 2276Right-handed alpha
Helix 190
AV1
C
2284 2289Right-handed alpha
Helix 191
AV2
C
2290 2309Right-handed alpha
Helix 192
AV3
C
2324 2336Right-handed alpha
Helix 193
AV4
C
2337 2350Right-handed alpha
Helix 194
AV5
C
2366 2381Right-handed alpha
Helix 195
AV6
C
2383 2399Right-handed alpha
Helix 196
AV7
C
2401 2416Right-handed alpha
Helix 197
AV8
C
2420 2430Right-handed alpha
Helix 198
AV9
C
2436 2440Right-handed 310
Helix 199
AW1
C
2441 2448Right-handed alpha
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There are no sheets in PDB entry 8YAD
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