Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YAG entry

There are 16 chains in PDB entry 8YAG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 22	ILE 209
A	ILE 211	GLN 427
B	PRO 22	ILE 209
B	ILE 211	GLN 427
C	PRO 22	ILE 209
C	ILE 211	GLN 427
D	PRO 22	ILE 209
D	ILE 211	GLN 427
E	PRO 22	ILE 209
E	ILE 211	GLN 427
F	PRO 22	ILE 209
F	ILE 211	GLN 427
G	PRO 22	ILE 209
G	ILE 211	GLN 427
H	PRO 22	ILE 209
H	ILE 211	GLN 427

There are128 helices in PDB entry 8YAG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	100	Right-handed 310
Helix 2	AA2	A	102	120	Right-handed alpha
Helix 3	AA3	A	132	142	Right-handed alpha
Helix 4	AA4	A	171	179	Right-handed alpha
Helix 5	AA5	A	182	186	Right-handed 310
Helix 6	AA6	A	190	204	Right-handed alpha
Helix 7	AA7	A	230	244	Right-handed alpha
Helix 8	AA8	A	254	265	Right-handed alpha
Helix 9	AA9	A	276	287	Right-handed alpha
Helix 10	AB1	A	293	304	Right-handed alpha
Helix 11	AB2	A	314	322	Right-handed alpha
Helix 12	AB3	A	325	336	Right-handed alpha
Helix 13	AB4	A	354	363	Right-handed alpha
Helix 14	AB5	A	366	373	Right-handed alpha
Helix 15	AB6	A	375	383	Right-handed alpha
Helix 16	AB7	A	408	414	Right-handed 310
Helix 17	AB8	B	96	100	Right-handed 310
Helix 18	AB9	B	102	120	Right-handed alpha
Helix 19	AC1	B	132	142	Right-handed alpha
Helix 20	AC2	B	171	179	Right-handed alpha
Helix 21	AC3	B	182	186	Right-handed 310
Helix 22	AC4	B	190	204	Right-handed alpha
Helix 23	AC5	B	230	244	Right-handed alpha
Helix 24	AC6	B	254	265	Right-handed alpha
Helix 25	AC7	B	276	287	Right-handed alpha
Helix 26	AC8	B	293	304	Right-handed alpha
Helix 27	AC9	B	314	322	Right-handed alpha
Helix 28	AD1	B	325	336	Right-handed alpha
Helix 29	AD2	B	354	363	Right-handed alpha
Helix 30	AD3	B	366	373	Right-handed alpha
Helix 31	AD4	B	375	383	Right-handed alpha
Helix 32	AD5	B	408	414	Right-handed 310
Helix 33	AD6	C	96	100	Right-handed 310
Helix 34	AD7	C	102	120	Right-handed alpha
Helix 35	AD8	C	132	142	Right-handed alpha
Helix 36	AD9	C	171	179	Right-handed alpha
Helix 37	AE1	C	182	186	Right-handed 310
Helix 38	AE2	C	190	204	Right-handed alpha
Helix 39	AE3	C	230	244	Right-handed alpha
Helix 40	AE4	C	254	265	Right-handed alpha
Helix 41	AE5	C	276	287	Right-handed alpha
Helix 42	AE6	C	293	304	Right-handed alpha
Helix 43	AE7	C	314	322	Right-handed alpha
Helix 44	AE8	C	325	336	Right-handed alpha
Helix 45	AE9	C	354	363	Right-handed alpha
Helix 46	AF1	C	366	373	Right-handed alpha
Helix 47	AF2	C	375	383	Right-handed alpha
Helix 48	AF3	C	408	414	Right-handed 310
Helix 49	AF4	D	96	100	Right-handed 310
Helix 50	AF5	D	102	120	Right-handed alpha
Helix 51	AF6	D	132	142	Right-handed alpha
Helix 52	AF7	D	171	179	Right-handed alpha
Helix 53	AF8	D	182	186	Right-handed 310
Helix 54	AF9	D	190	204	Right-handed alpha
Helix 55	AG1	D	230	244	Right-handed alpha
Helix 56	AG2	D	254	265	Right-handed alpha
Helix 57	AG3	D	276	287	Right-handed alpha
Helix 58	AG4	D	293	304	Right-handed alpha
Helix 59	AG5	D	314	322	Right-handed alpha
Helix 60	AG6	D	325	336	Right-handed alpha
Helix 61	AG7	D	354	363	Right-handed alpha
Helix 62	AG8	D	366	373	Right-handed alpha
Helix 63	AG9	D	375	383	Right-handed alpha
Helix 64	AH1	D	408	414	Right-handed 310
Helix 65	AH2	E	96	100	Right-handed 310
Helix 66	AH3	E	102	120	Right-handed alpha
Helix 67	AH4	E	132	142	Right-handed alpha
Helix 68	AH5	E	171	179	Right-handed alpha
Helix 69	AH6	E	182	186	Right-handed 310
Helix 70	AH7	E	190	204	Right-handed alpha
Helix 71	AH8	E	230	244	Right-handed alpha
Helix 72	AH9	E	254	265	Right-handed alpha
Helix 73	AI1	E	276	287	Right-handed alpha
Helix 74	AI2	E	293	304	Right-handed alpha
Helix 75	AI3	E	314	322	Right-handed alpha
Helix 76	AI4	E	325	336	Right-handed alpha
Helix 77	AI5	E	354	363	Right-handed alpha
Helix 78	AI6	E	366	373	Right-handed alpha
Helix 79	AI7	E	375	383	Right-handed alpha
Helix 80	AI8	E	408	414	Right-handed 310
Helix 81	AI9	F	96	100	Right-handed 310
Helix 82	AJ1	F	102	120	Right-handed alpha
Helix 83	AJ2	F	132	142	Right-handed alpha
Helix 84	AJ3	F	171	179	Right-handed alpha
Helix 85	AJ4	F	182	186	Right-handed 310
Helix 86	AJ5	F	190	204	Right-handed alpha
Helix 87	AJ6	F	230	244	Right-handed alpha
Helix 88	AJ7	F	254	265	Right-handed alpha
Helix 89	AJ8	F	276	287	Right-handed alpha
Helix 90	AJ9	F	293	304	Right-handed alpha
Helix 91	AK1	F	314	322	Right-handed alpha
Helix 92	AK2	F	325	336	Right-handed alpha
Helix 93	AK3	F	354	363	Right-handed alpha
Helix 94	AK4	F	366	373	Right-handed alpha
Helix 95	AK5	F	375	383	Right-handed alpha
Helix 96	AK6	F	408	414	Right-handed 310
Helix 97	AK7	G	96	100	Right-handed 310
Helix 98	AK8	G	102	120	Right-handed alpha
Helix 99	AK9	G	132	142	Right-handed alpha
Helix 100	AL1	G	171	179	Right-handed alpha
Helix 101	AL2	G	182	186	Right-handed 310
Helix 102	AL3	G	190	204	Right-handed alpha
Helix 103	AL4	G	230	244	Right-handed alpha
Helix 104	AL5	G	254	265	Right-handed alpha
Helix 105	AL6	G	276	287	Right-handed alpha
Helix 106	AL7	G	293	304	Right-handed alpha
Helix 107	AL8	G	314	322	Right-handed alpha
Helix 108	AL9	G	325	336	Right-handed alpha
Helix 109	AM1	G	354	363	Right-handed alpha
Helix 110	AM2	G	366	373	Right-handed alpha
Helix 111	AM3	G	375	383	Right-handed alpha
Helix 112	AM4	G	408	414	Right-handed 310
Helix 113	AM5	H	96	100	Right-handed 310
Helix 114	AM6	H	102	120	Right-handed alpha
Helix 115	AM7	H	132	142	Right-handed alpha
Helix 116	AM8	H	171	179	Right-handed alpha
Helix 117	AM9	H	182	186	Right-handed 310
Helix 118	AN1	H	190	204	Right-handed alpha
Helix 119	AN2	H	230	244	Right-handed alpha
Helix 120	AN3	H	254	265	Right-handed alpha
Helix 121	AN4	H	276	287	Right-handed alpha
Helix 122	AN5	H	293	304	Right-handed alpha
Helix 123	AN6	H	314	322	Right-handed alpha
Helix 124	AN7	H	325	336	Right-handed alpha
Helix 125	AN8	H	354	363	Right-handed alpha
Helix 126	AN9	H	366	373	Right-handed alpha
Helix 127	AO1	H	375	383	Right-handed alpha
Helix 128	AO2	H	408	414	Right-handed 310

There are 32 sheets in PDB entry 8YAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	23	32	anti-parallel
Strand 3	A	42	47	anti-parallel
Strand 4	A	50	56	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	23	32	anti-parallel
Strand 3	A	66	77	parallel
Strand 4	A	398	401	anti-parallel
Strand 5	A	417	420	anti-parallel
Strand 6	A	423	426	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	122	127	parallel
Strand 3	A	149	152	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	248	251	parallel
Strand 3	A	268	269	parallel
Strand 4	A	289	290	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	23	32	anti-parallel
Strand 3	B	42	47	anti-parallel
Strand 4	B	50	56	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	23	32	anti-parallel
Strand 3	B	66	77	parallel
Strand 4	B	398	401	anti-parallel
Strand 5	B	417	420	anti-parallel
Strand 6	B	423	426	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	122	127	parallel
Strand 3	B	149	152	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	248	251	parallel
Strand 3	B	268	269	parallel
Strand 4	B	289	290	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	23	32	anti-parallel
Strand 3	C	42	47	anti-parallel
Strand 4	C	50	56	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	23	32	anti-parallel
Strand 3	C	66	77	parallel
Strand 4	C	398	401	anti-parallel
Strand 5	C	417	420	anti-parallel
Strand 6	C	423	426	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	84	first strand
Strand 2	C	122	127	parallel
Strand 3	C	149	152	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	248	251	parallel
Strand 3	C	268	269	parallel
Strand 4	C	289	290	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	23	32	anti-parallel
Strand 3	D	42	47	anti-parallel
Strand 4	D	50	56	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	38	first strand
Strand 2	D	23	32	anti-parallel
Strand 3	D	66	77	parallel
Strand 4	D	398	401	anti-parallel
Strand 5	D	417	420	anti-parallel
Strand 6	D	423	426	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	84	first strand
Strand 2	D	122	127	parallel
Strand 3	D	149	152	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	212	first strand
Strand 2	D	248	251	parallel
Strand 3	D	268	269	parallel
Strand 4	D	289	290	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	23	32	anti-parallel
Strand 3	E	42	47	anti-parallel
Strand 4	E	50	56	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	38	first strand
Strand 2	E	23	32	anti-parallel
Strand 3	E	66	77	parallel
Strand 4	E	398	401	anti-parallel
Strand 5	E	417	420	anti-parallel
Strand 6	E	423	426	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	84	first strand
Strand 2	E	122	127	parallel
Strand 3	E	149	152	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	212	first strand
Strand 2	E	248	251	parallel
Strand 3	E	268	269	parallel
Strand 4	E	289	290	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	23	32	anti-parallel
Strand 3	F	42	47	anti-parallel
Strand 4	F	50	56	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	38	first strand
Strand 2	F	23	32	anti-parallel
Strand 3	F	66	77	parallel
Strand 4	F	398	401	anti-parallel
Strand 5	F	417	420	anti-parallel
Strand 6	F	423	426	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	84	first strand
Strand 2	F	122	127	parallel
Strand 3	F	149	152	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	212	first strand
Strand 2	F	248	251	parallel
Strand 3	F	268	269	parallel
Strand 4	F	289	290	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	23	32	anti-parallel
Strand 3	G	42	47	anti-parallel
Strand 4	G	50	56	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	38	first strand
Strand 2	G	23	32	anti-parallel
Strand 3	G	66	77	parallel
Strand 4	G	398	401	anti-parallel
Strand 5	G	417	420	anti-parallel
Strand 6	G	423	426	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	84	first strand
Strand 2	G	122	127	parallel
Strand 3	G	149	152	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	209	212	first strand
Strand 2	G	248	251	parallel
Strand 3	G	268	269	parallel
Strand 4	G	289	290	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	23	32	anti-parallel
Strand 3	H	42	47	anti-parallel
Strand 4	H	50	56	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	37	38	first strand
Strand 2	H	23	32	anti-parallel
Strand 3	H	66	77	parallel
Strand 4	H	398	401	anti-parallel
Strand 5	H	417	420	anti-parallel
Strand 6	H	423	426	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	84	first strand
Strand 2	H	122	127	parallel
Strand 3	H	149	152	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	209	212	first strand
Strand 2	H	248	251	parallel
Strand 3	H	268	269	parallel
Strand 4	H	289	290	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YAG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAG