Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YAQ entry

There are 2 chains in PDB entry 8YAQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	HIS 985
B	VAL 2	HIS 986

There are 59 helices in PDB entry 8YAQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	23	Right-handed alpha
Helix 2	AA2	A	55	63	Right-handed alpha
Helix 3	AA3	A	63	72	Right-handed alpha
Helix 4	AA4	A	101	113	Right-handed alpha
Helix 5	AA5	A	155	160	Right-handed alpha
Helix 6	AA6	A	291	297	Right-handed alpha
Helix 7	AA7	A	297	304	Right-handed alpha
Helix 8	AA8	A	327	330	Right-handed 310
Helix 9	AA9	A	355	361	Right-handed alpha
Helix 10	AB1	A	418	433	Right-handed alpha
Helix 11	AB2	A	435	453	Right-handed alpha
Helix 12	AB3	A	463	472	Right-handed alpha
Helix 13	AB4	A	472	485	Right-handed alpha
Helix 14	AB5	A	501	503	Right-handed 310
Helix 15	AB6	A	504	515	Right-handed alpha
Helix 16	AB7	A	518	531	Right-handed alpha
Helix 17	AB8	A	555	572	Right-handed alpha
Helix 18	AB9	A	573	578	Right-handed 310
Helix 19	AC1	A	593	606	Right-handed alpha
Helix 20	AC2	A	634	650	Right-handed alpha
Helix 21	AC3	A	665	685	Right-handed alpha
Helix 22	AC4	A	687	709	Right-handed alpha
Helix 23	AC5	A	749	759	Right-handed alpha
Helix 24	AC6	A	763	777	Right-handed alpha
Helix 25	AC7	A	816	831	Right-handed alpha
Helix 26	AC8	A	835	852	Right-handed alpha
Helix 27	AC9	A	853	860	Right-handed 310
Helix 28	AD1	A	861	866	Right-handed alpha
Helix 29	AD2	A	890	904	Right-handed alpha
Helix 30	AD3	B	13	23	Right-handed alpha
Helix 31	AD4	B	55	63	Right-handed alpha
Helix 32	AD5	B	63	71	Right-handed alpha
Helix 33	AD6	B	101	112	Right-handed alpha
Helix 34	AD7	B	114	118	Right-handed 310
Helix 35	AD8	B	297	304	Right-handed alpha
Helix 36	AD9	B	327	330	Right-handed 310
Helix 37	AE1	B	355	361	Right-handed alpha
Helix 38	AE2	B	418	433	Right-handed alpha
Helix 39	AE3	B	435	453	Right-handed alpha
Helix 40	AE4	B	463	472	Right-handed alpha
Helix 41	AE5	B	472	485	Right-handed alpha
Helix 42	AE6	B	501	504	Right-handed 310
Helix 43	AE7	B	505	515	Right-handed alpha
Helix 44	AE8	B	518	531	Right-handed alpha
Helix 45	AE9	B	558	572	Right-handed alpha
Helix 46	AF1	B	574	578	Right-handed 310
Helix 47	AF2	B	593	606	Right-handed alpha
Helix 48	AF3	B	634	650	Right-handed alpha
Helix 49	AF4	B	665	685	Right-handed alpha
Helix 50	AF5	B	687	709	Right-handed alpha
Helix 51	AF6	B	749	759	Right-handed alpha
Helix 52	AF7	B	763	777	Right-handed alpha
Helix 53	AF8	B	791	795	Right-handed 310
Helix 54	AF9	B	799	803	Right-handed 310
Helix 55	AG1	B	816	831	Right-handed alpha
Helix 56	AG2	B	835	852	Right-handed alpha
Helix 57	AG3	B	853	860	Right-handed 310
Helix 58	AG4	B	861	866	Right-handed alpha
Helix 59	AG5	B	889	903	Right-handed alpha

There are 24 sheets in PDB entry 8YAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	B	305	311	anti-parallel
Strand 3	B	317	324	anti-parallel
Strand 4	B	332	342	anti-parallel
Strand 5	B	399	410	anti-parallel
Strand 6	B	260	270	anti-parallel
Strand 7	B	242	250	anti-parallel
Strand 8	B	231	238	anti-parallel
Strand 9	B	220	228	anti-parallel
Strand 10	B	128	131	anti-parallel
Strand 11	B	121	122	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	B	305	311	anti-parallel
Strand 3	B	317	324	anti-parallel
Strand 4	B	332	342	anti-parallel
Strand 5	B	345	347	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	36	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	79	84	parallel
Strand 4	A	87	92	anti-parallel
Strand 5	A	97	99	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	128	131	anti-parallel
Strand 3	A	220	228	anti-parallel
Strand 4	A	231	238	anti-parallel
Strand 5	A	242	250	anti-parallel
Strand 6	A	260	270	anti-parallel
Strand 7	A	399	410	anti-parallel
Strand 8	A	332	341	anti-parallel
Strand 9	A	346	347	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	128	131	anti-parallel
Strand 3	A	220	228	anti-parallel
Strand 4	A	231	238	anti-parallel
Strand 5	A	242	250	anti-parallel
Strand 6	A	260	270	anti-parallel
Strand 7	A	399	410	anti-parallel
Strand 8	A	332	341	anti-parallel
Strand 9	A	317	324	anti-parallel
Strand 10	A	305	311	anti-parallel
Strand 11	B	3	6	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	162	165	anti-parallel
Strand 3	A	171	174	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	212	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	276	285	anti-parallel
Strand 4	A	385	394	anti-parallel
Strand 5	A	351	353	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	459	first strand
Strand 2	A	924	930	anti-parallel
Strand 3	A	935	941	anti-parallel
Strand 4	A	976	984	parallel
Strand 5	A	953	958	anti-parallel
Strand 6	A	961	962	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	499	first strand
Strand 2	A	540	543	anti-parallel
Strand 3	A	547	550	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	582	first strand
Strand 2	A	590	592	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	664	first strand
Strand 2	A	718	719	anti-parallel
Strand 3	A	730	731	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	A	783	784	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	814	815	first strand
Strand 2	A	875	876	anti-parallel
Strand 3	A	883	884	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	907	908	first strand
Strand 2	A	911	913	anti-parallel
Strand 3	A	967	968	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	36	first strand
Strand 2	B	44	48	anti-parallel
Strand 3	B	79	83	parallel
Strand 4	B	88	92	anti-parallel
Strand 5	B	97	99	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	147	first strand
Strand 2	B	162	165	anti-parallel
Strand 3	B	173	174	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	276	285	anti-parallel
Strand 4	B	385	394	anti-parallel
Strand 5	B	351	353	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	459	first strand
Strand 2	B	924	930	anti-parallel
Strand 3	B	935	941	anti-parallel
Strand 4	B	976	984	parallel
Strand 5	B	953	958	anti-parallel
Strand 6	B	961	963	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	499	first strand
Strand 2	B	540	543	anti-parallel
Strand 3	B	547	550	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	580	582	first strand
Strand 2	B	590	592	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	B	718	719	anti-parallel
Strand 3	B	730	731	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	B	783	784	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	815	first strand
Strand 2	B	875	876	anti-parallel
Strand 3	B	883	884	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	907	908	first strand
Strand 2	B	911	913	anti-parallel
Strand 3	B	967	968	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YAQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAQ