Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YAR entry

There are 6 chains in PDB entry 8YAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	SER 439
C	MET 1	PRO 189
D	MET 1	GLU 427
E	MET 1	SER 439
F	MET 1	GLU 427
I	THR 214	TRP 263

There are 93 helices in PDB entry 8YAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	28	Right-handed alpha
Helix 2	AA2	B	38	43	Right-handed alpha
Helix 3	AA3	B	45	52	Right-handed alpha
Helix 4	AA4	B	72	81	Right-handed alpha
Helix 5	AA5	B	82	85	Right-handed 310
Helix 6	AA6	B	88	90	Right-handed 310
Helix 7	AA7	B	102	108	Right-handed alpha
Helix 8	AA8	B	110	129	Right-handed alpha
Helix 9	AA9	B	144	162	Right-handed alpha
Helix 10	AB1	B	182	197	Right-handed alpha
Helix 11	AB2	B	206	216	Right-handed alpha
Helix 12	AB3	B	223	244	Right-handed alpha
Helix 13	AB4	B	251	260	Right-handed alpha
Helix 14	AB5	B	277	282	Right-handed alpha
Helix 15	AB6	B	287	296	Right-handed alpha
Helix 16	AB7	B	297	301	Right-handed 310
Helix 17	AB8	B	306	310	Right-handed 310
Helix 18	AB9	B	324	338	Right-handed alpha
Helix 19	AC1	B	384	401	Right-handed alpha
Helix 20	AC2	B	404	410	Right-handed alpha
Helix 21	AC3	B	415	437	Right-handed alpha
Helix 22	AC4	C	6	10	Right-handed 310
Helix 23	AC5	C	20	26	Right-handed alpha
Helix 24	AC6	C	31	50	Right-handed alpha
Helix 25	AC7	C	57	64	Right-handed alpha
Helix 26	AC8	C	119	122	Right-handed 310
Helix 27	AC9	C	127	138	Right-handed alpha
Helix 28	AD1	C	141	143	Right-handed 310
Helix 29	AD2	C	151	161	Right-handed alpha
Helix 30	AD3	D	10	29	Right-handed alpha
Helix 31	AD4	D	41	46	Right-handed alpha
Helix 32	AD5	D	47	49	Right-handed 310
Helix 33	AD6	D	69	78	Right-handed alpha
Helix 34	AD7	D	81	85	Right-handed 310
Helix 35	AD8	D	86	90	Right-handed 310
Helix 36	AD9	D	100	106	Right-handed alpha
Helix 37	AE1	D	107	125	Right-handed alpha
Helix 38	AE2	D	142	159	Right-handed alpha
Helix 39	AE3	D	180	196	Right-handed alpha
Helix 40	AE4	D	204	213	Right-handed alpha
Helix 41	AE5	D	221	237	Right-handed alpha
Helix 42	AE6	D	237	242	Right-handed alpha
Helix 43	AE7	D	249	258	Right-handed alpha
Helix 44	AE8	D	260	263	Right-handed 310
Helix 45	AE9	D	285	294	Right-handed alpha
Helix 46	AF1	D	295	299	Right-handed 310
Helix 47	AF2	D	304	308	Right-handed 310
Helix 48	AF3	D	322	337	Right-handed alpha
Helix 49	AF4	D	338	341	Right-handed 310
Helix 50	AF5	D	374	390	Right-handed alpha
Helix 51	AF6	D	394	402	Right-handed alpha
Helix 52	AF7	D	404	426	Right-handed alpha
Helix 53	AF8	E	10	29	Right-handed alpha
Helix 54	AF9	E	48	51	Right-handed 310
Helix 55	AG1	E	71	81	Right-handed alpha
Helix 56	AG2	E	82	85	Right-handed 310
Helix 57	AG3	E	88	90	Right-handed 310
Helix 58	AG4	E	102	107	Right-handed alpha
Helix 59	AG5	E	111	129	Right-handed alpha
Helix 60	AG6	E	144	161	Right-handed alpha
Helix 61	AG7	E	182	195	Right-handed alpha
Helix 62	AG8	E	206	216	Right-handed alpha
Helix 63	AG9	E	223	241	Right-handed alpha
Helix 64	AH1	E	251	260	Right-handed alpha
Helix 65	AH2	E	277	282	Right-handed alpha
Helix 66	AH3	E	287	296	Right-handed alpha
Helix 67	AH4	E	297	301	Right-handed 310
Helix 68	AH5	E	324	338	Right-handed alpha
Helix 69	AH6	E	384	400	Right-handed alpha
Helix 70	AH7	E	404	411	Right-handed alpha
Helix 71	AH8	E	415	436	Right-handed alpha
Helix 72	AH9	F	10	29	Right-handed alpha
Helix 73	AI1	F	42	49	Right-handed 310
Helix 74	AI2	F	69	79	Right-handed alpha
Helix 75	AI3	F	81	85	Right-handed 310
Helix 76	AI4	F	86	88	Right-handed 310
Helix 77	AI5	F	100	106	Right-handed alpha
Helix 78	AI6	F	107	126	Right-handed alpha
Helix 79	AI7	F	142	159	Right-handed alpha
Helix 80	AI8	F	180	196	Right-handed alpha
Helix 81	AI9	F	203	214	Right-handed alpha
Helix 82	AJ1	F	221	237	Right-handed alpha
Helix 83	AJ2	F	237	242	Right-handed alpha
Helix 84	AJ3	F	249	258	Right-handed alpha
Helix 85	AJ4	F	275	280	Right-handed alpha
Helix 86	AJ5	F	285	294	Right-handed alpha
Helix 87	AJ6	F	322	337	Right-handed alpha
Helix 88	AJ7	F	338	341	Right-handed 310
Helix 89	AJ8	F	374	391	Right-handed alpha
Helix 90	AJ9	F	394	400	Right-handed alpha
Helix 91	AK1	F	405	426	Right-handed alpha
Helix 92	AK2	I	226	232	Right-handed alpha
Helix 93	AK3	I	247	256	Right-handed alpha

There are 12 sheets in PDB entry 8YAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	65	69	parallel
Strand 3	B	3	9	parallel
Strand 4	B	132	140	parallel
Strand 5	B	165	172	parallel
Strand 6	B	200	205	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	61	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	272	first strand
Strand 2	B	373	381	anti-parallel
Strand 3	B	312	321	anti-parallel
Strand 4	B	351	356	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	81	99	anti-parallel
Strand 3	C	68	78	anti-parallel
Strand 4	C	15	19	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	81	99	anti-parallel
Strand 3	C	103	117	anti-parallel
Strand 4	C	145	148	parallel
Strand 5	C	174	176	anti-parallel
Strand 6	C	168	169	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	2	9	parallel
Strand 4	D	129	138	parallel
Strand 5	D	163	170	parallel
Strand 6	D	198	203	parallel
Strand 7	D	265	270	parallel
Strand 8	D	365	371	anti-parallel
Strand 9	D	310	317	anti-parallel
Strand 10	D	349	353	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	53	first strand
Strand 2	D	59	61	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	94	first strand
Strand 2	E	65	69	parallel
Strand 3	E	3	9	parallel
Strand 4	E	132	140	parallel
Strand 5	E	165	172	parallel
Strand 6	E	200	205	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	61	63	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	272	first strand
Strand 2	E	373	381	anti-parallel
Strand 3	E	312	321	anti-parallel
Strand 4	E	351	356	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	90	92	first strand
Strand 2	F	63	67	parallel
Strand 3	F	3	9	parallel
Strand 4	F	130	138	parallel
Strand 5	F	163	169	parallel
Strand 6	F	198	202	parallel
Strand 7	F	265	270	parallel
Strand 8	F	364	371	anti-parallel
Strand 9	F	310	318	anti-parallel
Strand 10	F	349	354	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	53	first strand
Strand 2	F	59	61	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAR