Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YAT entry

There are 16 chains in PDB entry 8YAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 153
B
 GLN 4SER 118
C
 GLN 1SER 130
D
 LEU 4SER 127
E
 ALA 1GLN 153
F
 GLN 4SER 118
G
 GLN 1SER 130
H
 LEU 4SER 127
I
 ALA 1GLN 153
J
 GLN 4SER 118
K
 GLN 1SER 130
L
 LEU 4SER 127
M
 ALA 1GLN 153
N
 GLN 4SER 118
O
 GLN 1SER 130
P
 LEU 4SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8YAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 61Right-handed 310
Helix 2
AA2
B
26 31Right-handed alpha
Helix 3
AA3
B
89 93Right-handed 310
Helix 4
AA4
C
90 94Right-handed 310
Helix 5
AA5
D
87 91Right-handed 310
Helix 6
AA6
D
110 114Right-handed 310
Helix 7
AA7
E
55 61Right-handed 310
Helix 8
AA8
F
26 31Right-handed alpha
Helix 9
AA9
F
89 93Right-handed 310
Helix 10
AB1
G
113 117Right-handed 310
Helix 11
AB2
H
87 91Right-handed 310
Helix 12
AB3
H
110 114Right-handed 310
Helix 13
AB4
I
55 61Right-handed 310
Helix 14
AB5
J
26 31Right-handed alpha
Helix 15
AB6
J
64 67Right-handed 310
Helix 16
AB7
J
89 93Right-handed 310
Helix 17
AB8
K
90 94Right-handed 310
Helix 18
AB9
L
87 91Right-handed 310
Helix 19
AC1
L
110 114Right-handed 310
Helix 20
AC2
M
55 61Right-handed 310
Helix 21
AC3
M
131 135Right-handed 310
Helix 22
AC4
N
26 31Right-handed alpha
Helix 23
AC5
N
89 93Right-handed 310
Helix 24
AC6
P
87 91Right-handed 310
Helix 25
AC7
P
110 114Right-handed 310
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There are 39 sheets in PDB entry 8YAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
2 8anti-parallel
Strand 3
A
15 22anti-parallel
Strand 4
A
29 36anti-parallel
Strand 5
A
95 101anti-parallel
Strand 6
D
101 103anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
116 120anti-parallel
Strand 4
A
143 148anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
80 86anti-parallel
Strand 4
B
70 75anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
112 116parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
48 53anti-parallel
Strand 6
B
59 62anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
17 23anti-parallel
Strand 3
C
81 87anti-parallel
Strand 4
C
71 76anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 13first strand
Strand 2
C
124 129parallel
Strand 3
C
95 103anti-parallel
Strand 4
C
35 42anti-parallel
Strand 5
C
52 55anti-parallel
Strand 6
C
61 63anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 7first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
69 72anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
121 125parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 52anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
121 125parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
116 117anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 153first strand
Strand 2
E
2 9anti-parallel
Strand 3
E
15 22anti-parallel
Strand 4
E
29 36anti-parallel
Strand 5
E
95 101anti-parallel
Strand 6
H
101 103anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 89first strand
Strand 2
E
41 48anti-parallel
Strand 3
E
116 120anti-parallel
Strand 4
E
143 148anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 8first strand
Strand 2
F
18 25anti-parallel
Strand 3
F
80 86anti-parallel
Strand 4
F
70 75anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 13first strand
Strand 2
F
112 116parallel
Strand 3
F
94 100anti-parallel
Strand 4
F
34 40anti-parallel
Strand 5
F
46 53anti-parallel
Strand 6
F
59 62anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 7first strand
Strand 2
G
18 23anti-parallel
Strand 3
G
81 86anti-parallel
Strand 4
G
71 76anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
62 63first strand
Strand 2
G
52 55anti-parallel
Strand 3
G
35 42anti-parallel
Strand 4
G
95 103anti-parallel
Strand 5
G
119 120anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
62 63first strand
Strand 2
G
52 55anti-parallel
Strand 3
G
35 42anti-parallel
Strand 4
G
95 103anti-parallel
Strand 5
G
124 126anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 7first strand
Strand 2
H
17 23anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 72anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
121 125parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
121 125parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
116 117anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
150 153first strand
Strand 2
I
2 8anti-parallel
Strand 3
I
15 22anti-parallel
Strand 4
I
29 36anti-parallel
Strand 5
I
95 101anti-parallel
Strand 6
L
101 103anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
83 89first strand
Strand 2
I
41 48anti-parallel
Strand 3
I
116 120anti-parallel
Strand 4
I
143 148anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
5 8first strand
Strand 2
J
18 25anti-parallel
Strand 3
J
80 86anti-parallel
Strand 4
J
70 75anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
12 13first strand
Strand 2
J
112 116parallel
Strand 3
J
94 100anti-parallel
Strand 4
J
34 40anti-parallel
Strand 5
J
47 53anti-parallel
Strand 6
J
59 62anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 7first strand
Strand 2
K
18 25anti-parallel
Strand 3
K
81 86anti-parallel
Strand 4
K
71 76anti-parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 13first strand
Strand 2
K
124 129parallel
Strand 3
K
95 103anti-parallel
Strand 4
K
35 42anti-parallel
Strand 5
K
52 55anti-parallel
Strand 6
K
62 63anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
11 13first strand
Strand 2
K
124 129parallel
Strand 3
K
95 103anti-parallel
Strand 4
K
119 120anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 7first strand
Strand 2
L
18 23anti-parallel
Strand 3
L
78 83anti-parallel
Strand 4
L
69 72anti-parallel
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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
121 125parallel
Strand 3
L
92 98anti-parallel
Strand 4
L
33 39anti-parallel
Strand 5
L
45 52anti-parallel
Strand 6
L
58 60anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
121 125parallel
Strand 3
L
92 98anti-parallel
Strand 4
L
116 117anti-parallel
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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
150 153first strand
Strand 2
M
2 8anti-parallel
Strand 3
M
15 22anti-parallel
Strand 4
M
29 36anti-parallel
Strand 5
M
95 101anti-parallel
Strand 6
P
101 103anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
83 89first strand
Strand 2
M
41 48anti-parallel
Strand 3
M
116 120anti-parallel
Strand 4
M
143 148anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
5 8first strand
Strand 2
N
18 25anti-parallel
Strand 3
N
80 86anti-parallel
Strand 4
N
70 75anti-parallel
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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
12 13first strand
Strand 2
N
112 116parallel
Strand 3
N
94 100anti-parallel
Strand 4
N
34 40anti-parallel
Strand 5
N
46 53anti-parallel
Strand 6
N
59 62anti-parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
3 7first strand
Strand 2
O
17 25anti-parallel
Strand 3
O
81 87anti-parallel
Strand 4
O
71 76anti-parallel
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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
11 13first strand
Strand 2
O
124 129parallel
Strand 3
O
95 103anti-parallel
Strand 4
O
35 42anti-parallel
Strand 5
O
52 55anti-parallel
Strand 6
O
61 63anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
O
11 13first strand
Strand 2
O
124 129parallel
Strand 3
O
95 103anti-parallel
Strand 4
O
119 120anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
5 7first strand
Strand 2
P
17 23anti-parallel
Strand 3
P
78 84anti-parallel
Strand 4
P
69 72anti-parallel
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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 12first strand
Strand 2
P
121 125parallel
Strand 3
P
92 98anti-parallel
Strand 4
P
33 39anti-parallel
Strand 5
P
46 52anti-parallel
Strand 6
P
58 60anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
10 12first strand
Strand 2
P
121 125parallel
Strand 3
P
92 98anti-parallel
Strand 4
P
116 117anti-parallel
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