Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YAU entry

There are 6 chains in PDB entry 8YAU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2GLN 247
B
 GLY 2THR 245
C
 GLN 3GLN 247
D
 GLN 3GLN 247
E
 GLY 2GLN 247
F
 PHE 4GLN 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8YAU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
40 52Right-handed alpha
Helix 3
AA3
A
64 79Right-handed alpha
Helix 4
AA4
A
101 113Right-handed alpha
Helix 5
AA5
A
113 128Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
149 173Right-handed alpha
Helix 8
AA8
A
196 207Right-handed alpha
Helix 9
AA9
A
214 227Right-handed alpha
Helix 10
AB1
A
228 231Right-handed 310
Helix 11
AB2
A
243 247Right-handed 310
Helix 12
AB3
B
16 29Right-handed alpha
Helix 13
AB4
B
40 52Right-handed alpha
Helix 14
AB5
B
64 79Right-handed alpha
Helix 15
AB6
B
101 113Right-handed alpha
Helix 16
AB7
B
113 128Right-handed alpha
Helix 17
AB8
B
149 173Right-handed alpha
Helix 18
AB9
B
189 194Right-handed alpha
Helix 19
AC1
B
196 205Right-handed alpha
Helix 20
AC2
B
214 227Right-handed alpha
Helix 21
AC3
B
228 231Right-handed 310
Helix 22
AC4
C
16 29Right-handed alpha
Helix 23
AC5
C
40 52Right-handed alpha
Helix 24
AC6
C
64 79Right-handed alpha
Helix 25
AC7
C
101 113Right-handed alpha
Helix 26
AC8
C
113 128Right-handed alpha
Helix 27
AC9
C
139 143Right-handed 310
Helix 28
AD1
C
149 173Right-handed alpha
Helix 29
AD2
C
202 207Right-handed alpha
Helix 30
AD3
C
214 227Right-handed alpha
Helix 31
AD4
C
228 231Right-handed 310
Helix 32
AD5
C
243 247Right-handed 310
Helix 33
AD6
D
16 29Right-handed alpha
Helix 34
AD7
D
40 52Right-handed alpha
Helix 35
AD8
D
64 79Right-handed alpha
Helix 36
AD9
D
101 113Right-handed alpha
Helix 37
AE1
D
113 128Right-handed alpha
Helix 38
AE2
D
149 173Right-handed alpha
Helix 39
AE3
D
189 195Right-handed alpha
Helix 40
AE4
D
214 227Right-handed alpha
Helix 41
AE5
D
228 231Right-handed 310
Helix 42
AE6
E
16 30Right-handed alpha
Helix 43
AE7
E
40 52Right-handed alpha
Helix 44
AE8
E
64 79Right-handed alpha
Helix 45
AE9
E
101 113Right-handed alpha
Helix 46
AF1
E
113 128Right-handed alpha
Helix 47
AF2
E
139 144Right-handed alpha
Helix 48
AF3
E
149 173Right-handed alpha
Helix 49
AF4
E
214 227Right-handed alpha
Helix 50
AF5
E
228 231Right-handed 310
Helix 51
AF6
F
16 30Right-handed alpha
Helix 52
AF7
F
40 52Right-handed alpha
Helix 53
AF8
F
64 79Right-handed alpha
Helix 54
AF9
F
101 113Right-handed alpha
Helix 55
AG1
F
113 128Right-handed alpha
Helix 56
AG2
F
139 144Right-handed alpha
Helix 57
AG3
F
149 173Right-handed alpha
Helix 58
AG4
F
214 227Right-handed alpha
Helix 59
AG5
F
228 231Right-handed 310
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There are 6 sheets in PDB entry 8YAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
33 38parallel
Strand 3
A
8 12parallel
Strand 4
A
84 87parallel
Strand 5
A
132 137parallel
Strand 6
A
177 184parallel
Strand 7
A
237 240parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 59first strand
Strand 2
B
33 38parallel
Strand 3
B
8 11parallel
Strand 4
B
84 87parallel
Strand 5
B
132 137parallel
Strand 6
B
177 184parallel
Strand 7
B
237 240parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 59first strand
Strand 2
C
33 38parallel
Strand 3
C
8 11parallel
Strand 4
C
84 87parallel
Strand 5
C
132 137parallel
Strand 6
C
177 184parallel
Strand 7
C
237 240parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 59first strand
Strand 2
D
33 38parallel
Strand 3
D
8 11parallel
Strand 4
D
84 87parallel
Strand 5
D
132 137parallel
Strand 6
D
177 184parallel
Strand 7
D
237 240parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 58first strand
Strand 2
E
33 37parallel
Strand 3
E
8 12parallel
Strand 4
E
84 87parallel
Strand 5
E
132 137parallel
Strand 6
E
177 184parallel
Strand 7
E
236 240parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 59first strand
Strand 2
F
33 38parallel
Strand 3
F
8 11parallel
Strand 4
F
84 87parallel
Strand 5
F
133 137parallel
Strand 6
F
178 183parallel
Strand 7
F
236 239parallel
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