Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YAX entry

There are 4 chains in PDB entry 8YAX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 417	GLY 1945
B	PRO 1403	GLY 1945
C	HIS 31	ARG 401
D	HIS 31	ARG 401

There are102 helices in PDB entry 8YAX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	424	429	Right-handed alpha
Helix 2	AA2	A	446	453	Right-handed alpha
Helix 3	AA3	A	458	464	Right-handed alpha
Helix 4	AA4	A	491	501	Right-handed alpha
Helix 5	AA5	A	514	518	Right-handed 310
Helix 6	AA6	A	520	531	Right-handed alpha
Helix 7	AA7	A	556	568	Right-handed alpha
Helix 8	AA8	A	577	588	Right-handed alpha
Helix 9	AA9	A	612	624	Right-handed alpha
Helix 10	AB1	A	640	651	Right-handed alpha
Helix 11	AB2	A	661	674	Right-handed alpha
Helix 12	AB3	A	678	691	Right-handed alpha
Helix 13	AB4	A	734	744	Right-handed alpha
Helix 14	AB5	A	771	776	Right-handed alpha
Helix 15	AB6	A	792	796	Right-handed 310
Helix 16	AB7	A	806	818	Right-handed alpha
Helix 17	AB8	A	823	836	Right-handed alpha
Helix 18	AB9	A	855	868	Right-handed alpha
Helix 19	AC1	A	874	886	Right-handed alpha
Helix 20	AC2	A	888	901	Right-handed alpha
Helix 21	AC3	A	909	921	Right-handed alpha
Helix 22	AC4	A	945	950	Right-handed alpha
Helix 23	AC5	A	957	964	Right-handed alpha
Helix 24	AC6	A	1077	1081	Right-handed 310
Helix 25	AC7	A	1116	1128	Right-handed alpha
Helix 26	AC8	A	1155	1157	Right-handed 310
Helix 27	AC9	A	1158	1163	Right-handed 310
Helix 28	AD1	A	1181	1195	Right-handed alpha
Helix 29	AD2	A	1412	1440	Right-handed alpha
Helix 30	AD3	A	1445	1455	Right-handed alpha
Helix 31	AD4	A	1459	1465	Right-handed alpha
Helix 32	AD5	A	1467	1474	Right-handed alpha
Helix 33	AD6	A	1479	1483	Right-handed 310
Helix 34	AD7	A	1500	1515	Right-handed alpha
Helix 35	AD8	A	1519	1536	Right-handed alpha
Helix 36	AD9	A	1537	1541	Right-handed 310
Helix 37	AE1	A	1544	1556	Right-handed alpha
Helix 38	AE2	A	1558	1561	Right-handed 310
Helix 39	AE3	A	1562	1584	Right-handed alpha
Helix 40	AE4	A	1593	1598	Right-handed alpha
Helix 41	AE5	A	1648	1659	Right-handed alpha
Helix 42	AE6	A	1701	1704	Right-handed 310
Helix 43	AE7	A	1729	1747	Right-handed alpha
Helix 44	AE8	A	1756	1761	Right-handed alpha
Helix 45	AE9	A	1766	1785	Right-handed alpha
Helix 46	AF1	A	1787	1804	Right-handed alpha
Helix 47	AF2	A	1807	1820	Right-handed alpha
Helix 48	AF3	A	1829	1844	Right-handed alpha
Helix 49	AF4	A	1861	1865	Right-handed 310
Helix 50	AF5	A	1866	1877	Right-handed alpha
Helix 51	AF6	A	1882	1890	Right-handed alpha
Helix 52	AF7	A	1897	1903	Right-handed alpha
Helix 53	AF8	A	1904	1918	Right-handed alpha
Helix 54	AF9	B	1404	1440	Right-handed alpha
Helix 55	AG1	B	1445	1455	Right-handed alpha
Helix 56	AG2	B	1459	1464	Right-handed alpha
Helix 57	AG3	B	1467	1473	Right-handed alpha
Helix 58	AG4	B	1498	1515	Right-handed alpha
Helix 59	AG5	B	1519	1533	Right-handed alpha
Helix 60	AG6	B	1545	1555	Right-handed alpha
Helix 61	AG7	B	1558	1584	Right-handed alpha
Helix 62	AG8	B	1588	1592	Right-handed 310
Helix 63	AG9	B	1648	1660	Right-handed alpha
Helix 64	AH1	B	1701	1704	Right-handed 310
Helix 65	AH2	B	1706	1710	Right-handed 310
Helix 66	AH3	B	1729	1748	Right-handed alpha
Helix 67	AH4	B	1756	1763	Right-handed alpha
Helix 68	AH5	B	1767	1785	Right-handed alpha
Helix 69	AH6	B	1787	1804	Right-handed alpha
Helix 70	AH7	B	1807	1820	Right-handed alpha
Helix 71	AH8	B	1829	1844	Right-handed alpha
Helix 72	AH9	B	1861	1865	Right-handed 310
Helix 73	AI1	B	1866	1877	Right-handed alpha
Helix 74	AI2	B	1882	1889	Right-handed alpha
Helix 75	AI3	B	1897	1903	Right-handed alpha
Helix 76	AI4	B	1904	1919	Right-handed alpha
Helix 77	AI5	C	39	41	Right-handed 310
Helix 78	AI6	C	69	77	Right-handed alpha
Helix 79	AI7	C	144	148	Right-handed 310
Helix 80	AI8	C	183	185	Right-handed 310
Helix 81	AI9	C	245	251	Right-handed alpha
Helix 82	AJ1	C	259	269	Right-handed alpha
Helix 83	AJ2	C	270	273	Right-handed 310
Helix 84	AJ3	C	283	307	Right-handed alpha
Helix 85	AJ4	C	308	310	Right-handed 310
Helix 86	AJ5	C	311	331	Right-handed alpha
Helix 87	AJ6	C	337	350	Right-handed alpha
Helix 88	AJ7	C	354	370	Right-handed alpha
Helix 89	AJ8	C	371	373	Right-handed 310
Helix 90	AJ9	C	374	398	Right-handed alpha
Helix 91	AK1	D	39	41	Right-handed 310
Helix 92	AK2	D	69	77	Right-handed alpha
Helix 93	AK3	D	172	176	Right-handed 310
Helix 94	AK4	D	183	185	Right-handed 310
Helix 95	AK5	D	259	267	Right-handed alpha
Helix 96	AK6	D	268	273	Right-handed 310
Helix 97	AK7	D	281	299	Right-handed alpha
Helix 98	AK8	D	299	331	Right-handed alpha
Helix 99	AK9	D	337	351	Right-handed alpha
Helix 100	AL1	D	354	370	Right-handed alpha
Helix 101	AL2	D	371	373	Right-handed 310
Helix 102	AL3	D	374	397	Right-handed alpha

There are 39 sheets in PDB entry 8YAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	534	537	parallel
Strand 3	A	506	509	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	439	first strand
Strand 2	A	478	482	parallel
Strand 3	A	472	475	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	553	first strand
Strand 2	A	655	658	parallel
Strand 3	A	627	628	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	574	first strand
Strand 2	A	603	607	parallel
Strand 3	A	597	599	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	693	first strand
Strand 2	A	696	697	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	712	first strand
Strand 2	A	715	720	anti-parallel
Strand 3	A	725	728	anti-parallel
Strand 4	A	731	733	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	767	first strand
Strand 2	A	749	754	anti-parallel
Strand 3	A	799	802	parallel
Strand 4	A	779	781	anti-parallel
Strand 5	A	784	785	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	842	843	first strand
Strand 2	A	846	847	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	939	944	first strand
Strand 2	A	928	934	anti-parallel
Strand 3	A	974	979	anti-parallel
Strand 4	A	965	968	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	951	953	first strand
Strand 2	A	986	990	parallel
Strand 3	A	1048	1051	anti-parallel
Strand 4	A	1005	1011	anti-parallel
Strand 5	A	1016	1023	anti-parallel
Strand 6	A	1027	1031	anti-parallel
Strand 7	A	1034	1038	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	982	983	first strand
Strand 2	A	1054	1055	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	995	999	first strand
Strand 2	A	1040	1044	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1062	1065	first strand
Strand 2	A	1070	1073	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1083	1084	first strand
Strand 2	A	1087	1088	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1111	1114	first strand
Strand 2	A	1136	1141	parallel
Strand 3	A	1149	1153	parallel
Strand 4	A	1170	1175	parallel
Strand 5	A	1166	1167	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1491	1492	first strand
Strand 2	C	225	227	parallel
Strand 3	C	220	222	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1602	1609	first strand
Strand 2	A	1612	1619	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1670	1672	first strand
Strand 2	A	1751	1755	parallel
Strand 3	A	1722	1725	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1675	1679	first strand
Strand 2	A	1682	1689	anti-parallel
Strand 3	A	1692	1699	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1855	1857	first strand
Strand 2	A	1879	1881	parallel
Strand 3	A	1938	1939	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1893	1896	first strand
Strand 2	A	1922	1925	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1491	1492	first strand
Strand 2	D	225	226	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1602	1609	first strand
Strand 2	B	1612	1619	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1670	1672	first strand
Strand 2	B	1751	1755	parallel
Strand 3	B	1722	1725	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1675	1679	first strand
Strand 2	B	1682	1689	anti-parallel
Strand 3	B	1692	1699	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1846	1847	first strand
Strand 2	B	1922	1925	parallel
Strand 3	B	1893	1896	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1855	1856	first strand
Strand 2	B	1879	1880	parallel
Strand 3	B	1938	1939	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	118	122	parallel
Strand 5	C	109	112	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	83	84	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	139	141	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	166	170	anti-parallel
Strand 3	C	180	181	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	198	199	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	211	215	anti-parallel
Strand 3	C	232	236	anti-parallel
Strand 4	C	254	257	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	90	95	anti-parallel
Strand 4	D	118	122	parallel
Strand 5	D	106	112	anti-parallel
Strand 6	D	101	103	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	83	84	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	139	141	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	160	first strand
Strand 2	D	166	170	anti-parallel
Strand 3	D	180	181	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	198	199	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	206	first strand
Strand 2	D	211	215	anti-parallel
Strand 3	D	232	236	anti-parallel
Strand 4	D	254	257	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YAX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YAX