Analysis of interatomic Contacts of Structural Units in PDB entry:
8YB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YB4 entry

There are 3 chains in PDB entry 8YB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 52SER 621
A
 GLY 111SER 621
C
 CYS 10LYS 60
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 8YB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
55 77Right-handed alpha
Helix 2
AA2
B
82 90Right-handed alpha
Helix 3
AA3
B
97 110Right-handed alpha
Helix 4
AA4
B
135 142Right-handed alpha
Helix 5
AA5
B
162 166Right-handed 310
Helix 6
AA6
B
168 180Right-handed alpha
Helix 7
AA7
B
223 247Right-handed alpha
Helix 8
AA8
B
253 268Right-handed alpha
Helix 9
AA9
B
304 308Right-handed 310
Helix 10
AB1
B
309 319Right-handed alpha
Helix 11
AB2
B
355 366Right-handed alpha
Helix 12
AB3
B
411 458Right-handed alpha
Helix 13
AB4
B
461 466Right-handed alpha
Helix 14
AB5
B
469 473Right-handed 310
Helix 15
AB6
B
495 510Right-handed alpha
Helix 16
AB7
B
520 525Right-handed alpha
Helix 17
AB8
B
528 533Right-handed alpha
Helix 18
AB9
B
556 561Right-handed 310
Helix 19
AC1
B
580 592Right-handed alpha
Helix 20
AC2
B
600 621Right-handed alpha
Helix 21
AC3
A
136 141Right-handed alpha
Helix 22
AC4
A
162 167Right-handed 310
Helix 23
AC5
A
168 181Right-handed alpha
Helix 24
AC6
A
225 246Right-handed alpha
Helix 25
AC7
A
253 269Right-handed alpha
Helix 26
AC8
A
304 308Right-handed 310
Helix 27
AC9
A
309 319Right-handed alpha
Helix 28
AD1
A
355 366Right-handed alpha
Helix 29
AD2
A
411 457Right-handed alpha
Helix 30
AD3
A
459 464Right-handed 310
Helix 31
AD4
A
469 473Right-handed 310
Helix 32
AD5
A
495 510Right-handed alpha
Helix 33
AD6
A
528 533Right-handed alpha
Helix 34
AD7
A
580 592Right-handed alpha
Helix 35
AD8
A
600 621Right-handed alpha
Helix 36
AD9
C
45 54Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8YB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
332 335anti-parallel
Strand 3
B
129 134anti-parallel
Strand 4
B
119 124anti-parallel
Strand 5
B
212 218anti-parallel
Strand 6
B
200 207anti-parallel
Strand 7
B
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
284 290anti-parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
393 403anti-parallel
Strand 5
B
370 379anti-parallel
Strand 6
B
321 324anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 491first strand
Strand 2
B
478 483anti-parallel
Strand 3
B
549 554anti-parallel
Strand 4
B
538 543anti-parallel
Strand 5
B
515 518anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
332 335anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
121 123anti-parallel
Strand 5
A
212 218anti-parallel
Strand 6
A
200 207anti-parallel
Strand 7
A
190 193anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
284 291anti-parallel
Strand 3
A
272 278anti-parallel
Strand 4
A
394 403anti-parallel
Strand 5
A
370 378anti-parallel
Strand 6
A
321 324anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 491first strand
Strand 2
A
478 483anti-parallel
Strand 3
A
549 554anti-parallel
Strand 4
A
538 543anti-parallel
Strand 5
A
515 518anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 23first strand
Strand 2
C
26 31anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il