Analysis of interatomic Contacts of Structural Units in PDB entry:
8YB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YB5 entry

There are 4 chains in PDB entry 8YB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1411	GLY 1763
B	PRO 1403	GLY 1763
C	HIS 31	ARG 401
D	HIS 31	ARG 401

There are 55 helices in PDB entry 8YB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1411	1440	Right-handed alpha
Helix 2	AA2	A	1445	1455	Right-handed alpha
Helix 3	AA3	A	1459	1465	Right-handed alpha
Helix 4	AA4	A	1467	1474	Right-handed alpha
Helix 5	AA5	A	1479	1483	Right-handed 310
Helix 6	AA6	A	1500	1515	Right-handed alpha
Helix 7	AA7	A	1519	1536	Right-handed alpha
Helix 8	AA8	A	1544	1557	Right-handed alpha
Helix 9	AA9	A	1558	1561	Right-handed 310
Helix 10	AB1	A	1562	1584	Right-handed alpha
Helix 11	AB2	A	1593	1598	Right-handed alpha
Helix 12	AB3	A	1648	1659	Right-handed alpha
Helix 13	AB4	A	1701	1704	Right-handed 310
Helix 14	AB5	A	1729	1747	Right-handed alpha
Helix 15	AB6	A	1756	1761	Right-handed alpha
Helix 16	AB7	B	1404	1440	Right-handed alpha
Helix 17	AB8	B	1445	1455	Right-handed alpha
Helix 18	AB9	B	1459	1465	Right-handed alpha
Helix 19	AC1	B	1467	1473	Right-handed alpha
Helix 20	AC2	B	1498	1515	Right-handed alpha
Helix 21	AC3	B	1519	1533	Right-handed alpha
Helix 22	AC4	B	1545	1555	Right-handed alpha
Helix 23	AC5	B	1558	1585	Right-handed alpha
Helix 24	AC6	B	1648	1660	Right-handed alpha
Helix 25	AC7	B	1701	1704	Right-handed 310
Helix 26	AC8	B	1706	1710	Right-handed 310
Helix 27	AC9	B	1729	1748	Right-handed alpha
Helix 28	AD1	B	1756	1763	Right-handed alpha
Helix 29	AD2	C	39	41	Right-handed 310
Helix 30	AD3	C	69	78	Right-handed alpha
Helix 31	AD4	C	144	148	Right-handed 310
Helix 32	AD5	C	183	185	Right-handed 310
Helix 33	AD6	C	245	251	Right-handed alpha
Helix 34	AD7	C	259	269	Right-handed alpha
Helix 35	AD8	C	270	273	Right-handed 310
Helix 36	AD9	C	280	282	Right-handed 310
Helix 37	AE1	C	283	307	Right-handed alpha
Helix 38	AE2	C	308	310	Right-handed 310
Helix 39	AE3	C	311	332	Right-handed alpha
Helix 40	AE4	C	337	350	Right-handed alpha
Helix 41	AE5	C	354	369	Right-handed alpha
Helix 42	AE6	C	370	373	Right-handed 310
Helix 43	AE7	C	374	398	Right-handed alpha
Helix 44	AE8	D	39	41	Right-handed 310
Helix 45	AE9	D	69	77	Right-handed alpha
Helix 46	AF1	D	172	176	Right-handed 310
Helix 47	AF2	D	183	185	Right-handed 310
Helix 48	AF3	D	259	267	Right-handed alpha
Helix 49	AF4	D	268	273	Right-handed 310
Helix 50	AF5	D	281	299	Right-handed alpha
Helix 51	AF6	D	299	331	Right-handed alpha
Helix 52	AF7	D	337	351	Right-handed alpha
Helix 53	AF8	D	354	370	Right-handed alpha
Helix 54	AF9	D	371	373	Right-handed 310
Helix 55	AG1	D	374	397	Right-handed alpha

There are 19 sheets in PDB entry 8YB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1491	1492	first strand
Strand 2	C	225	227	parallel
Strand 3	C	220	222	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1602	1609	first strand
Strand 2	A	1612	1619	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1670	1672	first strand
Strand 2	A	1751	1755	parallel
Strand 3	A	1722	1725	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1675	1679	first strand
Strand 2	A	1682	1689	anti-parallel
Strand 3	A	1692	1699	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1491	1492	first strand
Strand 2	D	225	226	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1602	1609	first strand
Strand 2	B	1612	1619	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1692	1699	first strand
Strand 2	B	1682	1689	anti-parallel
Strand 3	B	1670	1679	anti-parallel
Strand 4	B	1751	1755	parallel
Strand 5	B	1722	1725	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	118	122	parallel
Strand 5	C	109	112	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	83	84	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	166	170	anti-parallel
Strand 3	C	180	181	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	211	215	anti-parallel
Strand 3	C	232	236	anti-parallel
Strand 4	C	254	257	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	90	95	anti-parallel
Strand 4	D	118	123	parallel
Strand 5	D	106	112	anti-parallel
Strand 6	D	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	83	84	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	139	141	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	160	first strand
Strand 2	D	166	170	anti-parallel
Strand 3	D	180	181	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	198	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	206	first strand
Strand 2	D	211	215	anti-parallel
Strand 3	D	232	236	anti-parallel
Strand 4	D	254	257	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YB5