Analysis of interatomic Contacts of Structural Units in PDB entry:
8YB6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YB6 entry

There are 11 chains in PDB entry 8YB6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	MET 381
B	ILE 2	ILE 268
C	G 1	G 61
D	MET 1	SER 372
E	MET 1	GLN 370
F	MET 1	ALA 374
G	MET 1	GLY 377
H	MET 1	GLY 377
I	MET 1	LYS 365
J	HIS 79	ILE 521
K	ASN 2	ILE 166

There are124 helices in PDB entry 8YB6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	48	Right-handed alpha
Helix 2	AA2	A	58	65	Right-handed alpha
Helix 3	AA3	A	144	156	Right-handed alpha
Helix 4	AA4	A	185	190	Right-handed alpha
Helix 5	AA5	A	280	294	Right-handed alpha
Helix 6	AA6	A	321	323	Right-handed 310
Helix 7	AA7	A	329	340	Right-handed alpha
Helix 8	AA8	A	357	372	Right-handed alpha
Helix 9	AA9	A	373	381	Right-handed alpha
Helix 10	AB1	B	19	24	Right-handed alpha
Helix 11	AB2	B	27	38	Right-handed alpha
Helix 12	AB3	B	42	48	Right-handed alpha
Helix 13	AB4	B	56	60	Right-handed 310
Helix 14	AB5	B	91	96	Right-handed alpha
Helix 15	AB6	B	166	183	Right-handed alpha
Helix 16	AB7	B	240	250	Right-handed alpha
Helix 17	AB8	D	38	48	Right-handed alpha
Helix 18	AB9	D	50	55	Right-handed 310
Helix 19	AC1	D	63	73	Right-handed alpha
Helix 20	AC2	D	74	82	Right-handed 310
Helix 21	AC3	D	83	89	Right-handed alpha
Helix 22	AC4	D	104	106	Right-handed 310
Helix 23	AC5	D	107	116	Right-handed alpha
Helix 24	AC6	D	124	136	Right-handed alpha
Helix 25	AC7	D	139	146	Right-handed alpha
Helix 26	AC8	D	188	193	Right-handed 310
Helix 27	AC9	D	222	230	Right-handed alpha
Helix 28	AD1	D	233	250	Right-handed alpha
Helix 29	AD2	D	280	285	Right-handed 310
Helix 30	AD3	D	295	315	Right-handed alpha
Helix 31	AD4	D	337	341	Right-handed 310
Helix 32	AD5	D	349	362	Right-handed alpha
Helix 33	AD6	E	38	48	Right-handed alpha
Helix 34	AD7	E	50	54	Right-handed 310
Helix 35	AD8	E	63	70	Right-handed alpha
Helix 36	AD9	E	74	76	Right-handed 310
Helix 37	AE1	E	77	88	Right-handed alpha
Helix 38	AE2	E	106	116	Right-handed alpha
Helix 39	AE3	E	122	135	Right-handed alpha
Helix 40	AE4	E	233	250	Right-handed alpha
Helix 41	AE5	E	256	261	Right-handed alpha
Helix 42	AE6	E	279	286	Right-handed 310
Helix 43	AE7	E	295	313	Right-handed alpha
Helix 44	AE8	E	329	332	Right-handed 310
Helix 45	AE9	E	349	361	Right-handed alpha
Helix 46	AF1	F	38	48	Right-handed alpha
Helix 47	AF2	F	63	73	Right-handed alpha
Helix 48	AF3	F	74	89	Right-handed alpha
Helix 49	AF4	F	105	117	Right-handed alpha
Helix 50	AF5	F	121	136	Right-handed alpha
Helix 51	AF6	F	139	146	Right-handed alpha
Helix 52	AF7	F	223	230	Right-handed alpha
Helix 53	AF8	F	233	249	Right-handed alpha
Helix 54	AF9	F	280	286	Right-handed 310
Helix 55	AG1	F	295	315	Right-handed alpha
Helix 56	AG2	F	329	332	Right-handed 310
Helix 57	AG3	F	349	362	Right-handed alpha
Helix 58	AG4	F	365	370	Right-handed alpha
Helix 59	AG5	G	38	48	Right-handed alpha
Helix 60	AG6	G	49	56	Right-handed 310
Helix 61	AG7	G	63	72	Right-handed alpha
Helix 62	AG8	G	76	89	Right-handed alpha
Helix 63	AG9	G	92	96	Right-handed 310
Helix 64	AH1	G	104	106	Right-handed 310
Helix 65	AH2	G	107	113	Right-handed alpha
Helix 66	AH3	G	122	135	Right-handed alpha
Helix 67	AH4	G	139	146	Right-handed alpha
Helix 68	AH5	G	223	231	Right-handed alpha
Helix 69	AH6	G	233	250	Right-handed alpha
Helix 70	AH7	G	280	285	Right-handed 310
Helix 71	AH8	G	295	314	Right-handed alpha
Helix 72	AH9	G	328	332	Right-handed 310
Helix 73	AI1	G	349	363	Right-handed alpha
Helix 74	AI2	G	368	372	Right-handed 310
Helix 75	AI3	H	38	48	Right-handed alpha
Helix 76	AI4	H	52	56	Right-handed 310
Helix 77	AI5	H	63	71	Right-handed alpha
Helix 78	AI6	H	77	89	Right-handed alpha
Helix 79	AI7	H	107	116	Right-handed alpha
Helix 80	AI8	H	121	134	Right-handed alpha
Helix 81	AI9	H	141	146	Right-handed alpha
Helix 82	AJ1	H	223	230	Right-handed alpha
Helix 83	AJ2	H	233	250	Right-handed alpha
Helix 84	AJ3	H	280	285	Right-handed 310
Helix 85	AJ4	H	295	315	Right-handed alpha
Helix 86	AJ5	H	329	332	Right-handed 310
Helix 87	AJ6	H	349	363	Right-handed alpha
Helix 88	AJ7	H	365	370	Right-handed alpha
Helix 89	AJ8	I	38	47	Right-handed alpha
Helix 90	AJ9	I	49	55	Right-handed alpha
Helix 91	AK1	I	139	144	Right-handed alpha
Helix 92	AK2	I	223	231	Right-handed alpha
Helix 93	AK3	I	233	248	Right-handed alpha
Helix 94	AK4	I	281	286	Right-handed 310
Helix 95	AK5	I	295	315	Right-handed alpha
Helix 96	AK6	I	328	332	Right-handed 310
Helix 97	AK7	I	339	343	Right-handed 310
Helix 98	AK8	I	349	362	Right-handed alpha
Helix 99	AK9	J	103	110	Right-handed alpha
Helix 100	AL1	J	120	143	Right-handed alpha
Helix 101	AL2	J	156	163	Right-handed alpha
Helix 102	AL3	J	164	167	Right-handed 310
Helix 103	AL4	J	189	192	Right-handed 310
Helix 104	AL5	J	217	225	Right-handed alpha
Helix 105	AL6	J	255	263	Right-handed alpha
Helix 106	AL7	J	287	292	Right-handed alpha
Helix 107	AL8	J	418	426	Right-handed alpha
Helix 108	AL9	J	427	438	Right-handed alpha
Helix 109	AM1	J	450	465	Right-handed alpha
Helix 110	AM2	J	467	474	Right-handed alpha
Helix 111	AM3	J	478	483	Right-handed alpha
Helix 112	AM4	J	486	498	Right-handed alpha
Helix 113	AM5	J	502	514	Right-handed alpha
Helix 114	AM6	K	3	14	Right-handed alpha
Helix 115	AM7	K	16	25	Right-handed alpha
Helix 116	AM8	K	34	52	Right-handed alpha
Helix 117	AM9	K	57	71	Right-handed alpha
Helix 118	AN1	K	80	90	Right-handed alpha
Helix 119	AN2	K	96	107	Right-handed alpha
Helix 120	AN3	K	108	111	Right-handed 310
Helix 121	AN4	K	113	115	Right-handed 310
Helix 122	AN5	K	116	130	Right-handed alpha
Helix 123	AN6	K	136	146	Right-handed alpha
Helix 124	AN7	K	149	165	Right-handed alpha

There are 31 sheets in PDB entry 8YB6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	17	first strand
Strand 2	A	124	142	anti-parallel
Strand 3	A	28	29	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	17	first strand
Strand 2	A	124	142	anti-parallel
Strand 3	A	67	86	anti-parallel
Strand 4	A	207	213	anti-parallel
Strand 5	A	241	253	anti-parallel
Strand 6	A	228	236	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	A	325	328	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	74	first strand
Strand 2	B	77	86	anti-parallel
Strand 3	B	3	10	anti-parallel
Strand 4	B	105	111	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	207	first strand
Strand 2	B	217	236	anti-parallel
Strand 3	B	122	129	anti-parallel
Strand 4	B	263	266	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	156	158	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	32	37	anti-parallel
Strand 3	D	176	178	anti-parallel
Strand 4	D	214	221	anti-parallel
Strand 5	D	171	173	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	32	37	anti-parallel
Strand 3	D	176	178	anti-parallel
Strand 4	D	214	221	anti-parallel
Strand 5	D	5	10	anti-parallel
Strand 6	D	268	271	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	101	103	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	327	first strand
Strand 2	D	346	347	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	29	first strand
Strand 2	E	32	37	anti-parallel
Strand 3	E	176	178	anti-parallel
Strand 4	E	214	222	anti-parallel
Strand 5	E	171	173	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	29	first strand
Strand 2	E	32	37	anti-parallel
Strand 3	E	176	178	anti-parallel
Strand 4	E	214	222	anti-parallel
Strand 5	E	2	10	anti-parallel
Strand 6	E	268	274	anti-parallel
Strand 7	E	323	327	anti-parallel
Strand 8	E	345	347	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	103	104	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	187	first strand
Strand 2	E	208	210	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	176	178	anti-parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	171	173	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	176	178	anti-parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	2	10	anti-parallel
Strand 6	F	268	274	anti-parallel
Strand 7	F	323	327	anti-parallel
Strand 8	F	345	347	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	101	104	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	187	first strand
Strand 2	F	208	210	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	171	173	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	32	37	anti-parallel
Strand 3	G	176	178	anti-parallel
Strand 4	G	214	222	anti-parallel
Strand 5	G	2	10	anti-parallel
Strand 6	G	268	274	anti-parallel
Strand 7	G	323	327	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	185	187	first strand
Strand 2	G	208	210	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	214	222	anti-parallel
Strand 5	H	2	10	anti-parallel
Strand 6	H	268	274	anti-parallel
Strand 7	H	323	327	anti-parallel
Strand 8	H	345	347	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	101	104	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	185	187	first strand
Strand 2	H	208	210	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	214	222	anti-parallel
Strand 5	I	2	10	anti-parallel
Strand 6	I	269	273	anti-parallel
Strand 7	I	323	324	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	187	first strand
Strand 2	I	208	210	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	99	102	first strand
Strand 2	J	90	94	anti-parallel
Strand 3	J	114	116	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	324	329	anti-parallel
Strand 3	J	297	301	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	248	252	first strand
Strand 2	J	389	398	anti-parallel
Strand 3	J	401	411	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	305	306	first strand
Strand 2	J	320	321	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	74	75	first strand
Strand 2	K	134	135	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YB6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YB6