Analysis of interatomic Contacts of Structural Units in PDB entry:
8YB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YB7 entry

There are 8 chains in PDB entry 8YB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1411	GLY 1763
B	PRO 1403	GLY 1763
C	HIS 31	SER 493
D	HIS 31	ARG 401
E	ILE 1411	GLY 1763
F	PRO 1403	GLY 1763
G	HIS 31	SER 493
H	HIS 31	ARG 401

There are118 helices in PDB entry 8YB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1411	1440	Right-handed alpha
Helix 2	AA2	A	1445	1455	Right-handed alpha
Helix 3	AA3	A	1459	1465	Right-handed alpha
Helix 4	AA4	A	1467	1474	Right-handed alpha
Helix 5	AA5	A	1479	1483	Right-handed 310
Helix 6	AA6	A	1500	1515	Right-handed alpha
Helix 7	AA7	A	1519	1536	Right-handed alpha
Helix 8	AA8	A	1544	1556	Right-handed alpha
Helix 9	AA9	A	1558	1561	Right-handed 310
Helix 10	AB1	A	1562	1584	Right-handed alpha
Helix 11	AB2	A	1593	1598	Right-handed alpha
Helix 12	AB3	A	1648	1659	Right-handed alpha
Helix 13	AB4	A	1701	1704	Right-handed 310
Helix 14	AB5	A	1729	1747	Right-handed alpha
Helix 15	AB6	A	1756	1761	Right-handed alpha
Helix 16	AB7	B	1404	1440	Right-handed alpha
Helix 17	AB8	B	1445	1455	Right-handed alpha
Helix 18	AB9	B	1459	1464	Right-handed alpha
Helix 19	AC1	B	1467	1473	Right-handed alpha
Helix 20	AC2	B	1498	1515	Right-handed alpha
Helix 21	AC3	B	1519	1533	Right-handed alpha
Helix 22	AC4	B	1545	1555	Right-handed alpha
Helix 23	AC5	B	1558	1584	Right-handed alpha
Helix 24	AC6	B	1648	1660	Right-handed alpha
Helix 25	AC7	B	1701	1704	Right-handed 310
Helix 26	AC8	B	1706	1710	Right-handed 310
Helix 27	AC9	B	1729	1748	Right-handed alpha
Helix 28	AD1	B	1756	1763	Right-handed alpha
Helix 29	AD2	C	39	41	Right-handed 310
Helix 30	AD3	C	69	77	Right-handed alpha
Helix 31	AD4	C	144	148	Right-handed 310
Helix 32	AD5	C	183	185	Right-handed 310
Helix 33	AD6	C	245	251	Right-handed alpha
Helix 34	AD7	C	259	269	Right-handed alpha
Helix 35	AD8	C	270	273	Right-handed 310
Helix 36	AD9	C	283	307	Right-handed alpha
Helix 37	AE1	C	308	310	Right-handed 310
Helix 38	AE2	C	311	331	Right-handed alpha
Helix 39	AE3	C	337	350	Right-handed alpha
Helix 40	AE4	C	354	369	Right-handed alpha
Helix 41	AE5	C	370	373	Right-handed 310
Helix 42	AE6	C	374	398	Right-handed alpha
Helix 43	AE7	C	411	416	Right-handed alpha
Helix 44	AE8	C	423	431	Right-handed alpha
Helix 45	AE9	C	437	452	Right-handed alpha
Helix 46	AF1	C	460	480	Right-handed alpha
Helix 47	AF2	D	69	77	Right-handed alpha
Helix 48	AF3	D	172	176	Right-handed 310
Helix 49	AF4	D	183	185	Right-handed 310
Helix 50	AF5	D	259	267	Right-handed alpha
Helix 51	AF6	D	268	273	Right-handed 310
Helix 52	AF7	D	281	299	Right-handed alpha
Helix 53	AF8	D	299	331	Right-handed alpha
Helix 54	AF9	D	337	351	Right-handed alpha
Helix 55	AG1	D	354	370	Right-handed alpha
Helix 56	AG2	D	371	373	Right-handed 310
Helix 57	AG3	D	374	397	Right-handed alpha
Helix 58	AG4	E	1412	1440	Right-handed alpha
Helix 59	AG5	E	1445	1455	Right-handed alpha
Helix 60	AG6	E	1459	1464	Right-handed alpha
Helix 61	AG7	E	1467	1474	Right-handed alpha
Helix 62	AG8	E	1483	1487	Right-handed 310
Helix 63	AG9	E	1500	1515	Right-handed alpha
Helix 64	AH1	E	1519	1536	Right-handed alpha
Helix 65	AH2	E	1537	1541	Right-handed 310
Helix 66	AH3	E	1544	1556	Right-handed alpha
Helix 67	AH4	E	1558	1561	Right-handed 310
Helix 68	AH5	E	1562	1584	Right-handed alpha
Helix 69	AH6	E	1593	1598	Right-handed alpha
Helix 70	AH7	E	1648	1659	Right-handed alpha
Helix 71	AH8	E	1701	1705	Right-handed 310
Helix 72	AH9	E	1729	1747	Right-handed alpha
Helix 73	AI1	E	1756	1763	Right-handed alpha
Helix 74	AI2	F	1404	1440	Right-handed alpha
Helix 75	AI3	F	1445	1455	Right-handed alpha
Helix 76	AI4	F	1459	1464	Right-handed alpha
Helix 77	AI5	F	1467	1473	Right-handed alpha
Helix 78	AI6	F	1498	1515	Right-handed alpha
Helix 79	AI7	F	1519	1533	Right-handed alpha
Helix 80	AI8	F	1545	1555	Right-handed alpha
Helix 81	AI9	F	1558	1584	Right-handed alpha
Helix 82	AJ1	F	1648	1660	Right-handed alpha
Helix 83	AJ2	F	1701	1704	Right-handed 310
Helix 84	AJ3	F	1706	1710	Right-handed 310
Helix 85	AJ4	F	1729	1748	Right-handed alpha
Helix 86	AJ5	F	1756	1763	Right-handed alpha
Helix 87	AJ6	G	39	41	Right-handed 310
Helix 88	AJ7	G	69	77	Right-handed alpha
Helix 89	AJ8	G	144	148	Right-handed 310
Helix 90	AJ9	G	183	185	Right-handed 310
Helix 91	AK1	G	245	251	Right-handed alpha
Helix 92	AK2	G	261	269	Right-handed alpha
Helix 93	AK3	G	270	272	Right-handed 310
Helix 94	AK4	G	280	282	Right-handed 310
Helix 95	AK5	G	283	307	Right-handed alpha
Helix 96	AK6	G	308	310	Right-handed 310
Helix 97	AK7	G	311	331	Right-handed alpha
Helix 98	AK8	G	337	350	Right-handed alpha
Helix 99	AK9	G	354	369	Right-handed alpha
Helix 100	AL1	G	370	373	Right-handed 310
Helix 101	AL2	G	374	398	Right-handed alpha
Helix 102	AL3	G	411	418	Right-handed alpha
Helix 103	AL4	G	423	431	Right-handed alpha
Helix 104	AL5	G	437	443	Right-handed alpha
Helix 105	AL6	G	444	446	Right-handed 310
Helix 106	AL7	G	447	452	Right-handed alpha
Helix 107	AL8	G	460	482	Right-handed alpha
Helix 108	AL9	H	39	41	Right-handed 310
Helix 109	AM1	H	69	77	Right-handed alpha
Helix 110	AM2	H	183	185	Right-handed 310
Helix 111	AM3	H	259	267	Right-handed alpha
Helix 112	AM4	H	268	273	Right-handed 310
Helix 113	AM5	H	282	299	Right-handed alpha
Helix 114	AM6	H	299	331	Right-handed alpha
Helix 115	AM7	H	337	351	Right-handed alpha
Helix 116	AM8	H	354	370	Right-handed alpha
Helix 117	AM9	H	371	373	Right-handed 310
Helix 118	AN1	H	374	398	Right-handed alpha

There are 38 sheets in PDB entry 8YB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1491	1492	first strand
Strand 2	C	225	227	parallel
Strand 3	C	220	222	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1602	1609	first strand
Strand 2	A	1612	1619	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1692	1699	first strand
Strand 2	A	1682	1689	anti-parallel
Strand 3	A	1670	1679	anti-parallel
Strand 4	A	1751	1755	parallel
Strand 5	A	1722	1725	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1491	1492	first strand
Strand 2	D	225	226	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1602	1609	first strand
Strand 2	B	1612	1619	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1692	1699	first strand
Strand 2	B	1682	1689	anti-parallel
Strand 3	B	1670	1679	anti-parallel
Strand 4	B	1751	1755	parallel
Strand 5	B	1722	1725	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	118	122	parallel
Strand 5	C	109	112	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	83	84	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	139	141	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	160	first strand
Strand 2	C	166	170	anti-parallel
Strand 3	C	180	181	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	198	199	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	206	first strand
Strand 2	C	211	215	anti-parallel
Strand 3	C	232	236	anti-parallel
Strand 4	C	254	257	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	422	first strand
Strand 2	C	485	487	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	55	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	90	95	anti-parallel
Strand 4	D	118	122	parallel
Strand 5	D	106	112	anti-parallel
Strand 6	D	101	103	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	83	84	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	139	141	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	160	first strand
Strand 2	D	166	170	anti-parallel
Strand 3	D	180	181	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	198	199	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	206	first strand
Strand 2	D	211	215	anti-parallel
Strand 3	D	232	236	anti-parallel
Strand 4	D	254	257	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1602	1609	first strand
Strand 2	E	1612	1619	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1670	1672	first strand
Strand 2	E	1751	1755	parallel
Strand 3	E	1722	1725	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1675	1679	first strand
Strand 2	E	1682	1689	anti-parallel
Strand 3	E	1692	1699	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1602	1609	first strand
Strand 2	F	1612	1619	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1692	1699	first strand
Strand 2	F	1682	1689	anti-parallel
Strand 3	F	1670	1679	anti-parallel
Strand 4	F	1751	1755	parallel
Strand 5	F	1722	1725	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	43	50	anti-parallel
Strand 3	G	90	95	anti-parallel
Strand 4	G	118	122	parallel
Strand 5	G	109	112	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	64	first strand
Strand 2	G	83	84	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	131	134	first strand
Strand 2	G	139	142	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	181	first strand
Strand 2	G	166	170	parallel
Strand 3	G	156	160	anti-parallel
Strand 4	G	191	193	anti-parallel
Strand 5	G	198	199	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	203	206	first strand
Strand 2	G	211	215	anti-parallel
Strand 3	G	232	236	anti-parallel
Strand 4	G	254	257	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	222	first strand
Strand 2	G	225	227	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	420	422	first strand
Strand 2	G	485	487	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	55	first strand
Strand 2	H	43	50	anti-parallel
Strand 3	H	90	95	anti-parallel
Strand 4	H	118	122	parallel
Strand 5	H	106	112	anti-parallel
Strand 6	H	101	103	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	64	first strand
Strand 2	H	83	84	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	134	first strand
Strand 2	H	139	141	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	160	first strand
Strand 2	H	166	170	anti-parallel
Strand 3	H	180	181	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	191	192	first strand
Strand 2	H	198	199	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	206	first strand
Strand 2	H	211	215	anti-parallel
Strand 3	H	232	236	anti-parallel
Strand 4	H	254	257	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	222	first strand
Strand 2	H	225	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YB7