Analysis of interatomic Contacts of Structural Units in PDB entry:
8YBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8YBE entry

There is 1 chain in PDB entry 8YBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 27LYS 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8YBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 58Right-handed alpha
Helix 2
AA2
A
68 80Right-handed alpha
Helix 3
AA3
A
90 100Right-handed alpha
Helix 4
AA4
A
108 115Right-handed alpha
Helix 5
AA5
A
116 123Right-handed alpha
Helix 6
AA6
A
157 168Right-handed alpha
Helix 7
AA7
A
179 190Right-handed alpha
Helix 8
AA8
A
211 227Right-handed alpha
Helix 9
AA9
A
235 245Right-handed alpha
Helix 10
AB1
A
254 256Right-handed 310
Helix 11
AB2
A
257 265Right-handed alpha
Helix 12
AB3
A
298 309Right-handed alpha
Helix 13
AB4
A
312 323Right-handed alpha
Helix 14
AB5
A
330 338Right-handed alpha
Helix 15
AB6
A
340 353Right-handed alpha
Helix 16
AB7
A
360 379Right-handed alpha
Helix 17
AB8
A
382 396Right-handed alpha
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There are 4 sheets in PDB entry 8YBE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
32 36parallel
Strand 3
A
85 89parallel
Strand 4
A
286 292anti-parallel
Strand 5
A
132 137anti-parallel
Strand 6
A
327 328anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
128 129anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
248 253parallel
Strand 3
A
140 144anti-parallel
Strand 4
A
268 271anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 198first strand
Strand 2
A
201 203anti-parallel
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