Analysis of interatomic Contacts of Structural Units in PDB entry:
8YBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8YBO entry

There are 4 chains in PDB entry 8YBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	LYS 239
B	GLN 1	SER 128
C	GLU 3	LYS 239
D	GLN 1	SER 128

There are 21 helices in PDB entry 8YBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	19	Right-handed 310
Helix 2	AA2	A	23	28	Right-handed alpha
Helix 3	AA3	A	29	31	Right-handed 310
Helix 4	AA4	A	72	80	Right-handed alpha
Helix 5	AA5	A	159	175	Right-handed alpha
Helix 6	AA6	A	211	217	Right-handed alpha
Helix 7	AA7	A	218	222	Right-handed 310
Helix 8	AA8	B	28	32	Right-handed 310
Helix 9	AA9	B	87	91	Right-handed 310
Helix 10	AB1	B	111	113	Right-handed 310
Helix 11	AB2	C	15	19	Right-handed 310
Helix 12	AB3	C	23	28	Right-handed alpha
Helix 13	AB4	C	29	31	Right-handed 310
Helix 14	AB5	C	72	80	Right-handed alpha
Helix 15	AB6	C	159	175	Right-handed alpha
Helix 16	AB7	C	211	217	Right-handed alpha
Helix 17	AB8	C	218	222	Right-handed 310
Helix 18	AB9	D	28	32	Right-handed 310
Helix 19	AC1	D	62	65	Right-handed 310
Helix 20	AC2	D	87	91	Right-handed 310
Helix 21	AC3	D	111	113	Right-handed 310

There are 14 sheets in PDB entry 8YBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	84	88	anti-parallel
Strand 3	A	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	55	first strand
Strand 2	A	64	69	anti-parallel
Strand 3	A	114	117	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	154	first strand
Strand 2	A	127	140	anti-parallel
Strand 3	A	230	238	parallel
Strand 4	A	184	193	anti-parallel
Strand 5	A	196	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	224	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	8	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	122	126	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	46	51	anti-parallel
Strand 6	B	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	122	126	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	115	118	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	40	first strand
Strand 2	C	84	88	anti-parallel
Strand 3	C	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	54	first strand
Strand 2	C	65	69	anti-parallel
Strand 3	C	114	117	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	154	first strand
Strand 2	C	127	140	anti-parallel
Strand 3	C	231	238	parallel
Strand 4	C	184	193	anti-parallel
Strand 5	C	196	201	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	224	226	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	8	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	122	126	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	122	126	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	115	118	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8YBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8YBO